Re: [ccp4bb]: Structural Transition

["Gerard \"CD\" Kleywegt" <gerard@xray.bmc.uu.se>]

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you can do that with lsqman, see:
http://xray.bmc.uu.se/usf/mol_morph.html

for an alternative, see: http://bioinfo.mbb.yale.edu/MolMovDB/

--dvd


On Wed, 3 Jan 2001, Tsan Xiao wrote:

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> ***    CCP4 home page http://www.dl.ac.uk/CCP/CCP4/main.html    ***
> 
> Hi, All,
> 
> Is there a program that can make a movie of a protein structural
> transition, given a "start" and an "end" conformations of the same
> protein? 
> 
> We have determined two very different structures of one protein domain,
> and would like to present the structural transition in a reasonable way.
> Going from one structure to the other may involve unfolding part of the
> protein and refold it. Such a big conformational change is difficult to
> model, therefore, a program with some level of automation would be really
> helpful. 
> 
> ---------------------------------------------------
> Tsan Xiao, Ph.D.
> Howard Hughes Medical Institute
> University of Texas Southwestern Medical Center
> 5323 Harry Hines Blvd.
> Dallas, TX 75390-9050
> Tel: 214-648-5039
> Fax: 214-648-6336
> Email: xiao@chop.swmed.edu
> 
> 

******************************************************************
                        Gerard J.  Kleywegt
Dept. of Cell & Molecular Biology  Bolshevik University of Uppsala
                Biomedical Centre  Box 596
                SE-751 24 Uppsala  SWEDEN

    http://xray.bmc.uu.se/gerard/  mailto:gerard@xray.bmc.uu.se
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