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[ccp4bb]: ESD of distances!
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Hello All,
I have just completed refinement of a small protein at 1.0A resolution.
I used SHELX full matrix refinement. I have ESD's for every parameter I
refined. Shelx ouputs Bond lenghts and Bond Angles with ESD's - which is
great.
As a small molecule crystallographer in my previous birth, I used a
program called PARST (by Prof. Nardelli) to calculate the Min and MAxi
distances between atoms taking into account the B-factors of atoms. I
cannot use PARST now as my molecule is too big.
I am wondering if there is a place where all the formula for doing such
calculations exists? I would appreciate anybody pointing me to the right
place or the right program to do this for proteins.
Thanks.
Rams.
P.S: I am now refining two more proteins at this resolution the sizes are
from 60AA in asym, 325AA in Asym unit and 1500AA in asymm unit. So, I do
not want to be changing dimensions in PARST to do 1500AA.....
--
S. Ramaswamy
Department of Biochemistry.
University of Iowa.