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[ccp4bb]: Ligand occupancy



Dear All:
I have protein with two sites for a trisaccahride ligand. One has no negative density in the map where as the other
has negative density around the ether linkage (two linkages). The average B factor is around 25 for the ligand
with negative density. Does this mean that the site is partialy occupied? If so, how to deal with it?
 
subbu