Re: [ccp4bb]: Program to analyse bondlenght and angles rmsds?

[Lari Lehtiö <lari.lehtio@helsinki.fi>]

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Quoting Florian Schmitzberger <florian@cryst.bioc.cam.ac.uk>:

> Dear All,
> 
> I would be interested in a program to calculate rms deviations from ideal
> geometry for angles and bondlenght. I get this information easily when I
> refine my own structures. However I don't know a progam with which to
> obtain this information, when I for instance want to analyse a pdb (from
> the pdb-databank; when I don't have reflection files to use a standard
> refinement program to do this job). Whatcheck gives me the RMSD in
> Z-scores, but I would also like to have the absolute values of the
> rmsds.
> 
> Any comments greatly appreciated.
> 
> Thank you,
> 
> Florian
> 
> -------------------------------------
> Florian Schmitzberger
> University of Cambridge
> Department of Biochemistry 
> 80 Tennis Court Road
> CB2 1GA Cambridge
> Tel: 0044-1223-766029

You can use for instance whatif 
http://www.cmbi.kun.nl/gv/whatif/

or run it remotely
http://biotech.embl-heidelberg.de:8400/

Lari Lehtiö

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University of Helsinki
Institute of Biotechnology
Macromolecular X-ray crystallography
P.O.Box 65
00014 HY
Finland
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