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[ccp4bb]: mail format flame war :-) (no MIME)
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Can I encourage people to post to this BB in plain text? There's no
reason for all this garbage (see below for example) which just makes
it hard to read (sometimes impossible)
Phil
Abhinav Kumar writes:
> Hi,
>
> I am using ARP_WARP through CCP4I to run an automated model building
> starting from experimental phases.
> I specify the MTZ and Sequence files, number of residues and number of
> molecules. When I submit the job, it crashes with the error:
> Program to blame REFMAC5.
>
> When I see the file WarpNtrace_refine.last, it seems that refmac5 is trying
> to read the file arp_0.pdb and says that there are no scatterers. This file
> is empty in the sub-directory N_arp_warp.
>
> What should I do to fix this problem?
>
> Thanks
> Abhinav
>
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Abhinav Kumar, Ph. D.
> Plexxikon, Inc.
> 91 Bolivar Dr. Suite A Tel: 510.647.4021
> Berkeley, CA - 94710 Fax: 510.548.4785
> <mailto:akumar@plexxikon.com> akumar@plexxikon.com
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>
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>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'>Hi,<o:p></o:p></span></font></p>
>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'><o:p> </o:p></span></font></p>
>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'>I am using ARP_WARP through CCP4I to run an automated model
> building starting from experimental phases.<o:p></o:p></span></font></p>
>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'>I specify the MTZ and Sequence files, number of residues and
> number of molecules. When I submit the job, it crashes with the error:<o:p></o:p></span></font></p>
>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'>Program to blame REFMAC5.<o:p></o:p></span></font></p>
>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'><o:p> </o:p></span></font></p>
>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'>When I see the file WarpNtrace_refine.last, it seems that
> refmac5 is trying to read the file arp_0.pdb and says that there are no
> scatterers. This file is empty in the sub-directory N_arp_warp.<o:p></o:p></span></font></p>
>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'><o:p> </o:p></span></font></p>
>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'>What should I do to fix this problem?<o:p></o:p></span></font></p>
>
> <p class=MsoNormal><font size=3 face=Arial><span style='font-size:12.0pt;
> font-family:Arial'><o:p> </o:p></span></font></p>
>
> <p><font size=2 face="Times New Roman"><span style='font-size:10.0pt;
> mso-no-proof:yes'>Thanks<br>
> Abhinav<br>
> <br>
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<br>
> </span></font><font color=navy><span style='color:navy;mso-no-proof:yes'>Abhinav
> Kumar, Ph. D.</span></font><font size=2><span style='font-size:10.0pt;
> mso-no-proof:yes'><br>
> </span></font><span style='mso-no-proof:yes'>Plexxikon, Inc.<br>
> </span><st1:Street><st1:address><font size=2><span style='font-size:10.0pt;
> mso-no-proof:yes'>91 Bolivar Dr.</span></font></st1:address></st1:Street><font
> size=2><span style='font-size:10.0pt;mso-no-proof:yes'> Suite
> A Tel: 510.647.4021<br>
> </span></font><st1:place><st1:City><font size=2><span style='font-size:10.0pt;
> mso-no-proof:yes'>Berkeley</span></font></st1:City><font size=2><span
> style='font-size:10.0pt;mso-no-proof:yes'>, </span></font><st1:State><font
> size=2><span style='font-size:10.0pt;mso-no-proof:yes'>CA</span></font></st1:State></st1:place><font
> size=2><span style='font-size:10.0pt;mso-no-proof:yes'> -
> 94710 Fax: 510.548.4785<br>
> </span></font><span style='mso-no-proof:yes'><a
> href="mailto:akumar@plexxikon.com";><font size=2><span style='font-size:10.0pt'>akumar@plexxikon.com</span></font></a><br>
> </span><font size=2><span style='font-size:10.0pt;mso-no-proof:yes'>~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~</span></font><o:p></o:p></p>
>
> <p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
> 12.0pt'><o:p> </o:p></span></font></p>
>
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