Re: [ccp4bb]: homology modelling?

[Liz Potterton <lizp@ysbl.york.ac.uk>]

***  For details on how to be removed from this list visit the  ***
***          CCP4 home page http://www.ccp4.ac.uk         ***



Dear ccp4bb,

Sorry about this late follow up.

CCP4i has an interface to Modeller which simplifies one or two options which 
might be helpful for creating MR models.  Its hidden in Molecular Replacement 
module and called 'Edit Protein Structure'.  Hum, maybe not so obvious?  From 
the gui  Modeller will generate a model which just converts the sequence of 
the structure with no refinement (probably the best option) and also 
automatically cut out what Modeller flags as the poor regions of the model.

You do need to get Modeller from 

http://guitar.rockefeller.edu/modeller/modeller.html

....and I have not tested the interface in ages.  Need some motivating positive 
feedback. (or I guess negative feedback would work too).

Liz