Re: [ccp4bb]: Refmac makes proteingaps that I don't want

["Eleanor J. Dodson" <ccp4@ysbl.york.ac.uk>]

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  This makes life SO complicated that I would simply renumber the 
residues to make a continuous chain.
You can do this in the GUI under coordinate utilities - renumber chain 
option

(But use a pencil and paper first to work out what you want to renumber!)

Eleanor

Mathias Färnegårdh wrote:
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> Dear Refmac users
> 
> I have a protein where we removed (on DNA level) some residues in a loop which means that some residues are missing in the crystallized protein. I haven't figured out how to persuade refmac to realize that for instance residue 34 and 36 should be directly connected. Refmac interprets the gap in sequence numbers as a peptide bond gap although I've built them with nice peptide bonds in O before kicking them into refmac - some asssitance would be greatly appreciated. 
> 
> /mathias
> 
> 
>