cif_data_io.h

Go to the documentation of this file.
00001 
00004 //c Copyright (C) 2000-2006 Paul Emsley, Kevin Cowtan and University of York
00005 //L
00006 //L  This library is free software and is distributed under the terms
00007 //L  and conditions of version 2.1 of the GNU Lesser General Public
00008 //L  Licence (LGPL) with the following additional clause:
00009 //L
00010 //L     `You may also combine or link a "work that uses the Library" to
00011 //L     produce a work containing portions of the Library, and distribute
00012 //L     that work under terms of your choice, provided that you give
00013 //L     prominent notice with each copy of the work that the specified
00014 //L     version of the Library is used in it, and that you include or
00015 //L     provide public access to the complete corresponding
00016 //L     machine-readable source code for the Library including whatever
00017 //L     changes were used in the work. (i.e. If you make changes to the
00018 //L     Library you must distribute those, but you do not need to
00019 //L     distribute source or object code to those portions of the work
00020 //L     not covered by this licence.)'
00021 //L
00022 //L  Note that this clause grants an additional right and does not impose
00023 //L  any additional restriction, and so does not affect compatibility
00024 //L  with the GNU General Public Licence (GPL). If you wish to negotiate
00025 //L  other terms, please contact the maintainer.
00026 //L
00027 //L  You can redistribute it and/or modify the library under the terms of
00028 //L  the GNU Lesser General Public License as published by the Free Software
00029 //L  Foundation; either version 2.1 of the License, or (at your option) any
00030 //L  later version.
00031 //L
00032 //L  This library is distributed in the hope that it will be useful, but
00033 //L  WITHOUT ANY WARRANTY; without even the implied warranty of
00034 //L  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00035 //L  Lesser General Public License for more details.
00036 //L
00037 //L  You should have received a copy of the CCP4 licence and/or GNU
00038 //L  Lesser General Public License along with this library; if not, write
00039 //L  to the CCP4 Secretary, Daresbury Laboratory, Warrington WA4 4AD, UK.
00040 //L  The GNU Lesser General Public can also be obtained by writing to the
00041 //L  Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
00042 //L  MA 02111-1307 USA
00043 
00044 
00045 #ifndef CLIPPER_CIF_IO
00046 #define CLIPPER_CIF_IO
00047 
00048 #include "../core/hkl_datatypes.h"
00049 
00050 namespace clipper
00051 {
00052 
00054 
00059   class CIFfile
00060   {
00061    public:
00063     CIFfile();
00065     ~CIFfile();
00066 
00068     void open_read( const String filename_in );
00070     void close_read();
00071 
00073     const Spacegroup& spacegroup() const;
00075     const Cell& cell() const;
00077     const Resolution& resolution() const;
00079     const HKL_sampling& hkl_sampling() const;
00081     Resolution resolution( const Cell& cell ) const;
00082 
00084     void import_hkl_info( HKL_info& target );
00086     void import_hkl_data( HKL_data_base& cdata );
00088     bool contains_phases_p() const; 
00089 
00090 
00091   private:
00092     enum CIFmode { NONE, READ};
00093 
00094     CIFmode mode;                        
00095     String filename;                     
00096     HKL_data_base* f_sigf_i;             
00097     HKL_data_base* f_phi_i;              
00098     const HKL_data_base* f_sigf_o;       
00099     const HKL_data_base* phi_wt_o;       
00100 
00101     const HKL_info* hkl_ptr;
00102     
00103     Spacegroup space_group;
00104     Cell cell_; 
00105     Resolution resolution_; 
00106     HKL_sampling hkl_sampling_;
00107     int set_cell_symm_reso(std::string cif_file_name); 
00108     int set_cell_symm_reso_by_cif(std::string cif_file_name); 
00109     int set_cell_symm_reso_by_kludge(std::string cif_file_name); 
00110 
00111     // internal variables, due to the strange and variable nature of
00112     // mmCIF files, sometime these things are in the file, sometimes
00113     // not...
00114     // 
00115     short int clipper_cell_set_flag; 
00116     short int clipper_reso_set_flag; 
00117     short int clipper_symm_set_flag; 
00118 
00119   };
00120 
00121 } // namespace clipper
00122 
00123 #endif // CLIPPER_CIF_IO
00124 
00125 

Generated on 4 Jan 2010 for Clipper_cif by  doxygen 1.6.1