Installation:

Copy csloop to your $CBIN directory.
Copy protein.db to your $CLIBD directory.

Alternatively, you can run csloop from anywhere, as long as you
specify the filename/path of the protein.db file using the
--protein-db option.


Running the program:

See http://www.ysbl.york.ac.uk/~cowtan/sloop/csloop.html


Examples:

csloop --pdbin my.pdb --mapin my.map
csloop --pdbin my.pdb --mtzin my.mtz --colin-fc FWT,PHWT
csloop --pdbin my.pdb --mtzin my.mtz --colin-fo FP,SIGFP --colin-hl HLADM,HLBDM,HLCDM,HLDDM