The CCP4 website
«»
The CCP4 website - What is CCP4?
Collaborative Computational Project number 4
Licensing
Referencing CCP4
Philosophy of the CCP4 Suite
CCP4 Resources
«»
What is CCP4? - CCP4 Resources
Helpdesk
Documentation
Individual program documentation
Crystallographic guidance
CCP4 manual
Problems pages
Tutorials, examples and test data sets
$CEXAM
'(Basic) Maths for Protein Crystallography'
Email distribution lists
ccp4bb, ccp4-dev and several project-based lists
Meetings
Online programs
Not meant to replace a home installation!
«»
The CCP4 website - CCP4i
- Documentation
- Background and history
- Current and related developments
- Problems with CCP4i
- Tcl/Tk/BLT information
- New CCP4 interfaces
- 3rd-Party Interfaces
- Users: how to install
- Developers: how to package up
- CCP4i-related newsletter articles
- CCP4i Developers Resource
«»
CCP4i - Documentation
$CCP4I_HELP/index.html
- CCP4i Tutorial - to be replaced with interactive tutorial
- Roadmaps - linked in various places
- General Introduction
- Interface Modules - background and specifics
- Interface tasks - hints, tips, features to look out for
- Specialist Help - crystallographic theory of specific topics
- External Special Help - 'Bath Tutorials' and links to Kevin Cowtan goodies
- Installing/Programming - information for developers and installers
«»
CCP4i Documentation - General Introduction
CCP4i Reference, Getting Started, Various 'GUI-tricks'.
- Documentation and Help
- There are various levels of documentation in and around CCP4i:
- $CCP4I_HELP/index.html
- 'Help' button
- 'Message line help'
- 'Bubble help'
- 'Right mouse button help'
«»
CCP4i - Problems with CCP4i
ccp4gui@dl.ac.uk or 'Mail CCP4' button in CCP4i Main Window
CCP4i Trouble Shooting page
CCP4 installation Problems Page
=>
«»
The CCP4 website - CCP4mg
Links to Liz Potterton's and then to Stuart McNicholas' CCP4mg webpages.
«»
The CCP4 website - Downloads
Refers to License before Download
CCP4 ftp site and mirror sites in USA and Japan
«»
The CCP4 website - Documentation
<=<= Program Documentation - $CHTML
Tutorials - $CEXAM/tutorial/html/ =>=>
<=<= Roadmaps - $CCP4I_HELP/roadmaps/
General documentation - $CHTML =>=>
<=<= CCP4i Documentation - $CCP4I_HELP/
«»
Documentation - $CHTML Program Documentation
Contains 'REFERENCES.html', extracted from individual program documentation
Alphabetical list (INDEX.html) and function grouping (FUNCTION.html)
Also contains links to:
- tutorials
- CCP4i documentation
- pxmaths (Maths for Protein Crystallographers)
- various documents with crystallographic guidance
- roadmaps through the suite
«»
Documentation - Tutorials
Initially written for conference/workshop
HTML, to be used in conjunction with CCP4i
- Introduction to CCP4i, MTZ files and the Loggraph Utility
- Data Processing with MOSFLM, and Data Reduction
- Experimental Phasing (by MIR)
- Experimental Phasing (by MAD)
- Molecular Replacement
- Refinement
«»
Documentation - CCP4i
$CCP4I_HELP/index.html
«»
Documentation - PXMATHS
Notations and equations used in protein crystallography
Maths involved in phasing, phasing diagrams and intensity statistics
«»
Documentation - General Crystallographic Guidance
- alternate origins
- cheshire cells
- dm ncs averaging
- dm skeletonisation
- freerunique
- harvesting
- reindexing
- scalechoose - Kraut or Wilson?
- symmetry
- twinning - warning signs and operators
«»
Documentation - Roadmaps
Image map
with links to
other maps and
documentation
«»
The CCP4 website - Courses
- CCP4 Study Weekend
- Proceedings (including back copies)
- Photos
- Other resources
- CCP4 Workshops
- CCP4 sponsored/attended Workshops and Conferences
- ACA
- BCA
- St. Andrews Summer School
«»
The CCP4 website - Developers
Bulletin Board (ccp4-dev)
For Developers and Daresbury Staff
Information for contributors to CCP4
test data resources
release information
ccp4i resources
library routine templates
how to write CCP4 documentation
On-going projects
libraries (coordinates, Clipper, common tasks, mathematical subroutines)
automated testing
mmCIF, XML, Windows NT, Fortran90
Quick Guides
gprof, SWIG, CVS
Miscellaneous
«»
The CCP4 website - CCP4 People
- CCP4 address/Contact details
- CCP4 Executive Committee
- CCP4 Funded Developers
- CCP4 Developers/Contributors
«»