Proteinase Inhibitor Database

Serine Proteinases

Mammalian trypsin-like


Hydrogen Bonding Diagram

H-bonding diagram

Blue arrows indicate hydrogen bonding interactions between the enzyme and the inhibitors


General information about mammalian trypsin-like serine proteinases


Structural Comparisons

Overlap of fitted inhibitor structures.

dotTrypsin inhibitors.

dotChymotrypsin inhibitors.

dotElastase inhibitors.

dotThrombin inhibitors.

dotOther inhibitors.

Overlap of fitted protein structures.

dotTrypsin protein structures. 1trn (Human), 1sgt (Streptomyces griseus), 2tbs (Salmon), 2trm (Rat), 1mct (Porcine) and 2ptn (Bovine).

dotChymotrypsin protein structures. 4cha (Alpha-Chymotrypsin) and 2gch (Gamma-Chymotrypsin).

dotElastase protein structures. 1hne (Human Neutrophil Elastase) and 3est (Porcine Elastase).

dotThrombin protein structures. 1hrt (Bovine Alpha-Thrombin), 1ett (Bovine Epsilon-Thrombin), 4htc (Human Alpha-Thrombin) and 2hnt (Human Gamma-Thrombin).

dotOther protein structures. 1ton (Tonin), 1hcg (Blood Coagulation Factor XA), 3rp2 (Rat Mast Cell Protease II) and 2kai (Kallikrein A).


PDB CodePDB InfoProteinSourceE.C. no.Res./Å R-factorInhibitorCovalentInhibitor bound in active site
1TONViewToninRattus rattusNot Assigned1.8-None--
1HCGViewBlood Coagulation Factor XAHomo sapiens-2.216.8None--
3RP2ViewRat Mast Cell Protease IIRattus rattus-1.919.1None--
2KAIViewKallikrein ASus scrofa3.4.21.342.522.4Bovine pancreatic trypsin inhibitorNoView
2PKAViewKallikrein ASus scrofa3.4.21.342.0522.0BenzamidineNoView
1TRNViewTrypsinHomo sapiens3.4.21.42.217.7Diisopropyl-Fluorophosphofluoridate (DFP)YesView
1SGTViewTrypsinStreptomyces griseus (Strain K1)3.4.21.41.723.0None--
1BITViewTrypsin (Anionic)Salmo salar3.4.21.41.8319.9BenzamidineNoView
2TBSViewTrypsinSalmo salar3.4.21.41.8-Benzamidine InhibitorNoView
1BRAViewTrypsin (D189G, G226D)Rattus rattus3.4.21.42.215.6BenzamidineNoView
1BRBViewTrypsin (D189G, G226D)Rattus rattus3.4.21.42.119.8BPTI Variant (C5A, C55A)NoView
1BRCViewTrypsin (D189G, G226D)Rattus rattus3.4.21.42.516.8Amyloid Beta-Protein Precursor Inhibitor Domain (APPI)NoView
1TRMViewTrypsin (D102N)Rattus rattus3.4.21.42.316.0Benzamidine at pH 6NoView
2TRMViewTrypsin (D102N)Rattus rattus3.4.21.42.815.7BenzamidineNoView
1EPTViewE-TrypsinSus scrofa3.4.21.41.818.4None--
1MCTViewTrypsinSus scrofa3.4.21.41.616.7Inhibitor from Bitter GourdNoView
1NTPViewTrypsin (N48D, N95D & N115D)Bos taurus3.4.21.41.818.7Monoisopropylphosphoryl InhibitorYesView
1PPCViewTrypsinBos taurus3.4.21.41.818.1NAPAPNoView
1PPEViewTrypsinBos taurus3.4.21.42.015.1Trypsin Inhibitor (CMTI-I)NoView
1PPHViewTrypsinBos taurus3.4.21.41.916.73-TAPAPNoView
1SMFViewTrypsinBos taurus3.4.21.42.119.0Bowman-Birk InhibitorNoView
1TABViewTrypsinBos taurus3.4.21.42.320.0Bowman-Birk Inhibitor (AB-I)NoView
1TNGViewTrypsinBos taurus3.4.21.41.817.2AminomethylcyclohexaneNoView
1TNHViewTrypsinBos taurus3.4.21.41.816.84-FluorobenzylamineNoView
1TNIViewTrypsinBos taurus3.4.21.41.916.14-PhenylbutylamineNoView
1TNJViewTrypsinBos taurus3.4.21.41.817.02-PhenylethylamineNoView
1TNKViewTrypsinBos taurus3.4.21.41.817.13-PhenylpropylamineNoView
1TNLViewTrypsinBos taurus3.4.21.41.916.4TranylcypromineNoView
1TPAViewAnhydro-TrypsinBos taurus3.4.21.41.917.5Pancreatic Trypsin InhibitorNoView
1TPSViewTrypsinBos taurus3.4.21.41.916.2A90720ANoView
2PTNViewTrypsinBos taurus3.4.21.41.5519.3None--
2TLDViewTrypsinBos taurus3.4.21.42.617.3Streptomyces Subtilisin Inhibitor (M70G,M73K)NoView
3PTNViewTrypsinBos taurus3.4.21.41.719.8None--
1GBTViewBeta-TrypsinBos taurus3.4.21.42.016.2Guanidinobenzoylated at serine 195YesView
1TLDViewBeta-TrypsinBos taurus3.4.21.41.516.7None--
1TPOViewBeta-Trypsin (pH 5)Bos taurus3.4.21.41.818.0None--
1TPPViewBeta-TrypsinBos taurus3.4.21.41.419.1P-Amidino-Phenyl-Pyruvate (APPA)YesView
1TYNViewBeta-TrypsinBos taurus3.4.21.42.016.9Cyclotheonamide AYesView
2PTCViewBeta-TrypsinBos taurus3.4.21.41.918.7Pancreatic Trypsin InhibitorNoView
3PTBViewBeta-TrypsinBos taurus3.4.21.41.718.2Benzamidine at pH 7NoView
4PTPViewBeta-TrypsinBos taurus3.4.21.41.3417.1Diisopropylphosphoryl InhibitorYesView
1ACBViewAlpha-ChymotrypsinBos taurus3.4.21.12.016.7Eglin-CNoView
1CHOViewAlpha-ChymotrypsinBos taurus3.4.21.11.816.8Turkey Ovomucoid Third DomainNoView
2CHAViewAlpha-ChymotrypsinBos taurus3.4.21.12.0-P-Toluene sulfonateYesView
4CHAViewAlpha-ChymotrypsinBos taurus3.4.21.11.6819.8None--
5CHAViewAlpha-ChymotrypsinBos taurus3.4.21.11.6717.9None--
6CHAViewAlpha-ChymotrypsinBos taurus3.4.21.11.820.0Phenylethane Boronic AcidYesView
1GCDViewGamma-Chymotrypsin (pH 5.6)Bos taurus3.4.21.11.918.7Diethyl PhosphorylYesView
1GCTViewGamma-Chymotrypsin A (pH 7)Bos taurus3.4.21.11.617.3Tetrapetide (Autolytic cleavage product)YesView
1GHAViewGamma-ChymotrypsinBos taurus3.4.21.12.216.4Tetrapetide (Autolytic cleavage product)YesView
1GHBViewGamma-ChymotrypsinBos taurus3.4.21.12.015.2N-Acetyl D-TryptophanNoView
1GMCViewGamma-ChymotrypsinBos taurus3.4.21.12.217.6Tetra-Peptide (Autolytic cleavage product)YesView
1GMDViewGamma-ChymotrypsinBos taurus3.4.21.12.217.6Pentapeptide Tetrahedral IntermediateYesView
1GMHViewGamma-ChymotrypsinBos taurus3.4.21.12.118.7DiisopropylphosphorofluoridateYesView
2GCHViewGamma-ChymotrypsinBos taurus3.4.21.11.918.1None--
2GCTViewGamma-Chymotrypsin (pH 2)Bos taurus3.4.21.11.816.9Tetra-Peptide (Autolytic cleavage product)YesView
2GMTViewGamma-ChymotrypsinBos taurus3.4.21.11.818.8N-Ace-L-Ala-L-Phe-Alpha-ChloroethylketoneNoView
3GCHViewGamma-ChymotrypsinBos taurus3.4.21.11.920.3Trans-O-Hydroxy-Alpha-Methyl CinnamateYesView
3GCTViewGamma-Chymotrypsin A(pH 10.5)Bos taurus3.4.21.11.617.3Tetrapetide (Autolytic cleavage product)YesView
4GCHViewGamma-ChymotrypsinBos taurus3.4.21.11.920.9P-Diethylamino-O-Hydroxy-Alpha-Methyl CinnamateYesView
5GCHViewGamma-Chymotrypsin (Photolysis Product)Bos taurus3.4.21.12.715.6P-Diethylamino-O-Hydroxy-Alpha-Methyl CinnamateNoView
6GCHViewGamma-ChymotrypsinBos taurus3.4.21.12.118.0N-Acetyl-L-Phenylalanyl Trifluoromethyl KetoneYesView
7GCHViewGamma-ChymotrypsinBos taurus3.4.21.11.819.0N-Acetyl-L-Leu-L-Phe Trifluoromethyl KetoneYesView
8GCHViewGamma-ChymotrypsinBos taurus3.4.21.11.619.3Gly-Ala-TrpYesView
1EASViewElastaseSus Scrofa3.4.21.361.818.33-[[(Methylamino) Sulfonyl]Amino]-2-Oxo-6-Phenyl -N-[3,3,3-Trifluoro-1-(1-Methylethyl)-2-Oxopropyl] -1(2H)-PyridineacetamideYesView
1EATViewElastaseSus Scrofa3.4.21.362.016.72-[5-Methanesulfonylamino-2-(4-Aminophenyl)i -6-Oxo-1,6-Dihydro-1-Pyrimidinyl]-N- (3,3,3-Trifluoro-1-Isopropyl-2-Oxopropyl)AcetamideYesView
1EAUViewElastaseSus Scrofa3.4.21.362.016.12-[5-Amino-6-Oxo-2-(2-Thienyl)- 1,6-Dihydropyrimidin-1-yl)-N-[3,3-Difluoro-1-Isopropyl-2 -Oxo-3-(N-(2-Morpholinoethyl) Carbamoyl]Propyl]AcetamideYesView
1ELAViewElastaseSus Scrofa3.4.21.361.818.5Trifluoroacetyl-L-Lysyl-L-Prolyl-P-IsopropylanilideNoView
1ELBViewElastaseSus Scrofa3.4.21.362.115.0Trifluoroacetyl-L-Lys-L-Leu-P-IsopropylanilideNoView
1ELCViewElastaseSus Scrofa3.4.21.361.7515.0Trifluoroacetyl-L-Phe-P-IsopropylanilideNoView
1ELDViewElastaseSus Scrofa3.4.21.361.819.6Trifluoroacetyl-L-Phe-L-Ala-P-TrifluoromethylaninideNoView
1ELEViewElastaseSus Scrofa3.4.21.361.817.1Trifluoroacetyl-L-Val-L-Ala-P-TrifluoromethylaninideNoView
1ELFViewElastaseSus Scrofa3.4.21.361.718.0N-(Tert-Boc-Ala-Ala)-O-(P-Nitrobenzoyl) HydroxylamineYesView
1ELGViewElastase (pH 5)Sus Scrofa3.4.21.361.6517.0N-(Tert-Boc-Ala-Ala)-O-(P-Nitrobenzoyl) HydroxylamineYesView
1ESAViewElastase (-45C Form)Sus Scrofa3.4.21.361.6519.0None--
1ESBViewElastaseSus Scrofa3.4.21.362.321.0N-Carbobenzoxy-L-Ala-P-Nitrophenol EsterNoView
1INCViewElastaseSus Scrofa3.4.21.361.9417.2Benzoxazinone InhibitorYesView
1JIMViewElastaseSus Scrofa3.4.21.362.3115.33-Methoxy-4-Chloro-7-AminoisocoumarinYesView
2ESTViewElastaseSus Scrofa3.4.21.362.521.0Trifluoroacetyl-L-Lys-L-Ala -P-TrifluoromethylphenylanilideNoView
3ESTViewElastaseSus Scrofa3.4.21.361.6516.9None--
4ESTViewElastaseSus Scrofa3.4.21.361.7816.0Ace-Ala-Pro-Val-Difluoro-N-PhenylethylacetamideYesView
5ESTViewElastaseSus Scrofa3.4.21.362.0915.0Carbobenzoxy-Ala-Isoleucylboronic AcidYesView
6ESTViewElastaseSus Scrofa3.4.21.361.820.0DimethylformamideNoView
7ESTViewElastaseSus Scrofa3.4.21.361.819.0Trifluoroacetyl-L-Leu-L-Ala -P-TrifluoromethylphenylanilideNoView
8ESTViewElastaseSus Scrofa3.4.21.361.7817.0Guanidinium IsocoumarinYesView
9ESTViewElastaseSus Scrofa3.4.21.361.917.1Guanidinium IsocoumarinYesView
1ESTViewTosyl-ElastaseSus Scrofa3.4.21.362.5-P-ToluenesulfonylYesView
1HNEViewHuman Neutrophil ElastaseHomo sapiens3.4.21.371.8416.4Methoxysuccinyl-Ala-Ala-Pro-Ala Chloromethyl KetoneNoView
1PPFViewHuman Leukocyte ElastaseHomo sapiens3.4.21.371.816.6Third Domain of Turkey Ovomucoid InhibitorNoView
1PPGViewHuman Leukocyte ElastaseHomo sapiens3.4.21.372.314.5Meo-Succinyl-Ala-Ala-Pro-Val ChloromethylacetoneYesView
1ABIViewAlpha-ThrombinHomo sapiens3.4.21.52.313.2Hirulog 3NoView
1ABJViewAlpha-ThrombinHomo sapiens3.4.21.52.414.4D-Phe-Pro-Arg-CH2YesView
1DWBViewAlpha-ThrombinHomo sapiens3.4.21.53.1615.1BenzamidineNoView
1DWCViewAlpha-ThrombinHomo sapiens3.4.21.53.015.0MD-805 (Argatroban)NoView
1DWDViewAlpha-ThrombinHomo sapiens3.4.21.53.015.6NAPAPNoView
1DWEViewAlpha-ThrombinHomo sapiens3.4.21.53.016.4D-Phe-Pro-Arg-CH2YesView
1FPCViewAlpha-ThrombinHomo sapiens3.4.21.52.314.7DAPANoView
1FPHViewAlpha-ThrombinHomo sapiens3.4.21.52.516.6Fibrinopeptide AYesView
1HAIViewAlpha-ThrombinHomo sapiens3.4.21.52.413.9D-Phe-Pro-Arg-CH2YesView
1HAHViewAlpha-ThrombinHomo sapiens3.4.21.52.311.4None--
1HBTViewAlpha-ThrombinHomo sapiens3.4.21.52.018.1A Peptidyl Pyridinium Methyl KetoneYesView
1HGTViewAlpha-ThrombinHomo sapiens3.4.21.52.216.7None--
1HLTViewAlpha-ThrombinHomo sapiens3.4.21.53.014.6D-Phe-Pro-Arg-CH2YesView
1HUTViewAlpha-ThrombinHomo sapiens3.4.21.52.915.9D-Phe-Pro-Arg-CH2NoView
1IHSViewAlpha-ThrombinHomo sapiens3.4.21.52.016.9Hirutonin-2NoView
1IHTViewAlpha-ThrombinHomo sapiens3.4.21.52.116.2Hirutonin-6NoView
1NRNViewAlpha-ThrombinHomo sapiens3.4.21.53.117.9Receptor based peptide NRSNoView
1NROViewAlpha-ThrombinHomo sapiens3.4.21.53.117.1Receptor based peptide NRPNoView
1NRPViewAlpha-ThrombinHomo sapiens3.4.21.53.019.9Receptor based peptide NR'SNoView
1NRQViewAlpha-ThrombinHomo sapiens3.4.21.53.521.7Receptor based peptide D-FPR'SNoView
1NRRViewAlpha-ThrombinHomo sapiens3.4.21.52.414.5D-Phe-Pro-Arg-CH2YesView
1NRSViewAlpha-ThrombinHomo sapiens3.4.21.52.414.6Receptor based peptide NRP (1st 4 residues)NoView
1PPBViewAlpha-ThrombinHomo sapiens3.4.21.51.9215.6D-Phe-Pro-Arg-CH2YesView
1THRViewAlpha-ThrombinHomo sapiens3.4.21.52.315.5None--
1THSViewAlpha-ThrombinHomo sapiens3.4.21.52.216.1None--
1TMBViewAlpha-ThrombinHomo sapiens3.4.21.52.313.8Cyclotheonamide AYesView
1TMTViewAlpha-ThrombinHomo sapiens3.4.21.52.217.7CGP 50,856NoView
1TMUViewAlpha-ThrombinHomo sapiens3.4.21.52.520.2D-Phe-Pro-Arg-ChloromethylketoneYesView
2HATViewAlpha-ThrombinHomo sapiens3.4.21.52.514.3Fibrinopeptide A MimicNoView
2HGTViewAlpha-ThrombinHomo sapiens3.4.21.52.216.3Hirulog INoView
2HPPViewAlpha-ThrombinHomo sapiens3.4.21.53.315.7D-Phe-Pro-Arg-CH2NoView
2HPQViewAlpha-ThrombinHomo sapiens3.4.21.53.315.5D-Phe-Pro-Arg-CH2NoView
3HATViewAlpha-ThrombinHomo sapiens3.4.21.52.514.0Fibrinopeptide A MimicNoView
4HTCViewAlpha-ThrombinHomo sapiens3.4.21.52.317.3Hirudin (Variant 2, Lys 47)NoView
2HNTViewGamma-ThrombinHomo sapiens3.4.21.52.515.6None--
1BBR_bViewAlpha-ThrombinBos taurus3.4.21.52.316.7Fibrinopeptide Alpha(Residues 7-16)NoView
1BBR_cViewAlpha-ThrombinBos taurus3.4.21.52.316.7Fibrinopeptide Alpha(Residues 7-16)NoView
1HRTViewAlpha-ThrombinBos taurus3.4.21.52.815.5Hirudin Variant-1NoView
1BBR_aViewEpsilon-ThrombinBos taurus3.4.21.52.316.7Fibrinopeptide Alpha(Residues 7-16)NoView
1ETTViewEpsilon-ThrombinBos taurus3.4.21.52.516.74-TAPAPNoView
1ETRViewEpsilon-ThrombinBos taurus3.4.21.52.217.5MQPANoView
1ETSViewEpsilon-ThrombinBos taurus3.4.21.52.317.8NAPAPNoView


James Bray 11/6/96