Re: [ccp4bb]: How to superimpose one n2c & another c2n

[Jean-Philippe Cartailler <jp@anx12.bio.uci.edu>]

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In CCP4 I don't know how, but Swiss PDB Viewer is has a great way of doing
what you want.  Just highlight the residues to match in each "control
window" (make sure they are the same number of residues, and then go to
FIT, it'll fit them, spit out RMS diff., and then you can save your new
coordinates.  The program is available through
http://www.expasy.ch/spdbv/.

Good luck.

JP Cartailler

On Thu, 16 Mar 2000, Merak X. Zhang wrote:

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> 
> I find Ca trace of two proteins are similar, but in different N-termal,
> C-terminal direction, like one from residue id 200 to 300 but another 500
> to 400 in same topology. How can I superimpose that, is there any example?
> Many thanks.
> 
> Merak Zhang
> 
> 
> 
> 

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jean-Philippe Cartailler
Dept. of Molecular Biology and Biochemistry
University of California, Irvine
Hudel Lab, http://anx12.bio.uci.edu/~hudel/

	"When he to whom a person speaks does not understand,
	 and he who speaks  does not understand himself, that is
	 metaphysics."

						Voltaire	
	
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