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Re: [ccp4bb]: Structure/Sequence Database
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Hi,
Try out Psi-Blast:
http://www.ncbi.nlm.nih.gov/blast/psiblast.cgi
Select the pdb database (a bit behind the current release)
You can do something similar but a little less directly in Prodom:
http://www.toulouse.inra.fr/prodom.html
On Wed, 9 Feb 2000, Paul Hubbard wrote:
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> *** CCP4 home page http://www.dl.ac.uk/CCP/CCP4/main.html ***
>
> Hi all,
>
> I was having a quick look round RCSB and PDBSum to find a site where I can
> run a primary structure through a blast/fasta/etc to find sequence
> homologs of known structure. The old Brookhaven site had one - I am sure
> there's one still out there somewhere. Could someone please send me the
> URL. Thanks.
>
> ags
>
> *******************************************************************************
> Paul Hubbard
> Department of Biochemistry
> Medical College of Wisconsin
> 8701 Watertown Plank Rd.
> Milwaukee
> Wisconsin. 53226
>
> Tel: 414-456-4305
> Fax: 414-456-6510
> WWW: http://141.106.40.30
> *******************************************************************************
>
Allan Matte
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| Allan Matte | e-mail: Allan.Matte@BRI.NRC.CA |
| Macromolecular Structure Group | phone: (514) 496-2557 |
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