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[ccp4bb]: RESTRAIN DNA dictionary
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ccp4ers,
Does anyone have a DNA dictionary suitable for refinement in RESTRAIN?
(preferably one with no hydrogens).
I can't seem to eliminate all the discrepancies between my pdb file and
dna.dic (hydrogens, 5'-OH capped, etc) which is released with version 4.
Is there a simple way to get rid of all the hydrogens without renumbering
every atom in that residue in dna.dic, and how does one deal with capped
residues?
Thanks,
Brandt
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Brandt Eichman
Department of Biochemistry and Biophysics
2011 Agriculture & Life Sciences Building
Oregon State University, Corvallis, Oregon 97331
(541) 737-1870 (work) (541) 737-0481 (fax)
eichmanb@ucs.orst.edu