[ccp4bb]: summary domain movements

[Alexander.Pautsch@bc.boehringer-ingelheim.com]

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A brief summary on my problems with the use of dyndom:

Norbert Straeter indicated that the proteins should have:
   the same No. of residues
   maybe not contain modified residues (eg. phosphoTyrosines). 
Editing the pdb-files in this respect gave results only for very small
domain sizes ("domain" keyword). Those however did not reflect the actual
domain movement but rather some flexible residues at the N-terminus. Cutting
the N-terminus from the pdb-files gave more sensible results. 

Guoguang Lu advertized his DOMOV server
http://bioinfo1.mbfys.lu.se/cgi-bin/Domov/domov.cgi
which was very convenint to use.

Thanks


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Dr. Alex Pautsch
 Protein Crystallography /Structural Research 
 Boehringer Ingelheim Pharma Deutschland 
 Birkendorferstrasse 
 88400 BIBERACH, Germany 
 tel. +49 - (0)7351 - 54 4683 
 fax. +49 - (0)7351 - 54 98390 
 email alexander.pautsch@bc.boehringer-ingelheim.com
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