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Re: [ccp4bb]: dodgy indexing
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hi,
In denzo, mosaicity is defined as the smallest angle through which
the crystal can rotate about an axis or combination of axes while a
reflection is still observed.
From this definition, we can extend our logic for single crystal
oscillation photography...
delta phi = ( longest reciprocal cell / d*min)(180/pi) - mosaicity
mosaicity should be smaller than the first term so that delta
phi remains a positive quantity.
If crystal is highly mosaic, oscillation angle(delta phi)
should have been very small while collecting the data. Or else at the time
of processing one has to select a shell of reflections to start indexing
from equation mentioned above.
With regards
GOSU
__________________________________________________________________________
(_) LAB ADDRESS:: : HOSTEL ADDRESS:: (_)
| | : | |
| | Gosu Ramachandraiah : Gosu Ramachandraiah | |
| | Prof.M.Vijayan's Lab : Research Scholar | |
| | Molecular Biophysics Unit : M Block, Room # 31 | |
| | Indian Institute of Science : Indian Institute of Science | |
| | Bangalore 560012, INDIA : Bangalore-560012, INDIA | |
| | Ph :91-80-3092389 : Ph :91-80-3092453 | |
| | Fax :91-80-3600535 : | |
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On Tue, 27 Feb 2001, Lauris Kemp wrote:
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>
> Hello
> I'm trying to index a data set with denzo. The problem is with
> mosaicity-it looks about 1 but at this value it misses out some low
> resolution spots and seems to overfit for the number of spots at high
> resolution. Thought it might be misindexed but did a direct beam shot
> and the beam values look about right. It manages to autoindex it fine
> and the chi values are also fine.
> Lauris
>