Re: [ccp4bb]: PDB coordinates into protein sequence

["Gerard \"DVD\" Kleywegt" <gerard@xray.bmc.uu.se>]

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if you want 3-letter-code you can read it into O
and write out the sequence datablock (or construct
a C-shell command using grep and cut to do it)

if you want 1-letter-code, moleman2 contains
the SQuence PIr command which will write the
sequence to a file in PIR format (see:
http://xray.bmc.uu.se/usf/moleman2_man.html#H23)

--dvd

On Wed, 28 Mar 2001, Carlos Frazao wrote:

> Hi CCP4 users
> I would like to get the sequence of a file in PDB format, and possibly
> there is already
> a script/jiffy to do that. Could anyone help me. Thanks
> Carlos
> 
> --
> Carlos Frazao
> ITQB-UNL, Av Republica, Apartado 127, 2781-901-Oeiras, Portugal
> Phone:  (351)-214469666    FAX:    (351)-214433644
> e-mail: frazao@itqb.unl.pt

******************************************************************
                        Gerard J.  Kleywegt
Dept. of Cell & Molecular Biology  Bolshevik University of Uppsala
                Biomedical Centre  Box 596
                SE-751 24 Uppsala  SWEDEN

    http://xray.bmc.uu.se/gerard/  mailto:gerard@xray.bmc.uu.se
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