Re: [ccp4bb]: PDB coordinates into protein sequence

[Daniel Schlieper <Daniel.Schlieper@Uni-Koeln.DE>]

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Dear Carlos,

pdbset can do that:

pdbset xyzin yourpdbfile.pdb << eof
sequence single
eof

You will find the sequence in a file named SEQUENCE.

Best regards, Daniel

Carlos Frazao <frazao@itqb.unl.pt> writes:

> 
> [1  <text/plain; us-ascii (7bit)>]
> Hi CCP4 users
> I would like to get the sequence of a file in PDB format, and possibly
> there is already
> a script/jiffy to do that. Could anyone help me. Thanks
> Carlos
> 
> --
> Carlos Frazao
> ITQB-UNL, Av Republica, Apartado 127, 2781-901-Oeiras, Portugal
> Phone:  (351)-214469666    FAX:    (351)-214433644
> e-mail: frazao@itqb.unl.pt
> 
> 
> [2  <text/html; us-ascii (7bit)>]
> 

-- 
Daniel Schlieper                      Institut fuer Biochemie
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Daniel.Schlieper@Uni-Koeln.De         Universitaet zu Koeln 
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