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[ccp4bb]: Detwin and Molecular Replacement
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Hello,everyone.
I hope somebody advise me.
I have a data set that was processed in R3, a=108A,b=108A,c=155A.
First,I tried molecular replacement by using Molrep.
Input pdb file is the same primary sequence.
I show a part of output.
---------------------------------------
RF RF/Sigma
Sol-RF1 0.4123E+05 10.73
2 0.3381E+05 8.80
3 0.2729E+05 7.10
4 0.2712E+05 7.06
Dens/sig R-fac Corr
Sol-TF1 1 5.14 0.618 0.058
2 4.74 0.656 0.057
3 4.64 0.654 0.059
Sol-TF2 1 4.98 0.653 0.067
2 4.61 0.655 0.066
3 4.52 0.656 0.056
---------------------------------------------
I could not find the solution.
I think this crystal is twin.
Running my data on the Yeates twin server I get back
twin fraction of 0.465.
So,I try to run Detwin and Molrep again.
Thus the following a part of these output.
--------------------------------------------------------------
Number of reflections written to output file 34282
Number of omitted because the twin mate was not observed 1
Dmin Number CC_before CC_after
detwinning detwinning
6.93 890 0.999 0.829
4.91 1730 0.999 0.908
4.01 2282 0.999 0.907
3.48 2570 0.999 0.867
3.11 2600 0.998 0.742
2.84 2444 0.996 0.551
2.63 2124 0.996 0.484
2.46 1894 0.994 0.359
2.32 1854 0.994 0.362
2.20 1622 0.994 0.358
---------------------------------------
RF RF/Sigma
Sol-RF1 0.4517E+05 11.14
2 0.3215E+05 7.93
3 0.2829E+05 6.98
4 0.2828E+05 6.98
Dens/sig R-fac Corr
Sol-TF1 1 5.61 0.641 0.060
2 4.66 0.642 0.054
3 4.39 0.638 0.054
Sol-TF2 1 5.24 0.641 0.057
2 4.35 0.645 0.050
3 4.21 0.645 0.047
---------------------------------------------
It is not successful.
I think Detwin does not succeed.
But I don't understand what is wrong.
Is the twin fraction is wrong or not?
What parameter can I change?
How can I proceed this analysis?
Thanks for the support.
--------------------------------
Toshimitsu Tanaka
tel. +81-3-5841-5544
Food Eng. Lab, Univ. Tokyo