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[ccp4bb]: refmac error
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Hi,
I'm getting an error from refmac that I can't quite decipher, and I was
wondering if someone could help me out? The error message is appended below. For
what it's worth, I've previously run this job and not had any problems. This is
simply my next iteration in refinement, so the pdb is essentially the same as
those I used previously, but with a few more aa's added. It seems to be
complaining of too many chains, but I only have three...
Thanks for any suggestions!
Chris
Department of Biochemistry
Vanderbilt University
Nashville, TN 37232
Input file :/home/crife/aps_0202/refine_nat/warp7abc.pdb
------------------------------
--- LIBRARY OF MONOMERS ---
_lib_name mon_lib
_lib_version 3.1
_lib_update 16/07/00
------------------------------
NUMBER OF MONOMERS IN THE LIBRARY : 2407
with complete description : 336
NUMBER OF MODIFICATIONS : 37
NUMBER OF LINKS : 62
I am reading libraries. Please wait.
- energy parameters
- monomer"s description (links & mod )
FORMATTED OLD file opened on unit 45
Logical name: ATOMSF, Filename: /sb/apps/ccp4/ccp4-4.1.1/lib/data/atomsf.lib
FORMATTED OLD file opened on unit 8
Logical name: SYMOP, Filename: /sb/apps/ccp4/ccp4-4.1.1/lib/data/symop.lib
ERROR: number of chains > 100
Change parameter MAXCHAIN in "atom_com.fh"
$TEXT:Warning: $$ comment $$
WARNING: CCPOPN Logical name /tmp/crife/refmac5_temp.75793_new.crd has no
associated file name
$$
Open failed: Unit: 8, File: /tmp/crife/refmac5_temp.75793_new.crd (logical:
/tmp/crife/refmac5_temp.75793_new.crd)
Last system error message:
No such file or directory
Refmac_5.0.36: Open failed: File: /tmp/crife/refmac5_temp.75793_new.crd
Times: User: 5.6s System: 0.2s Elapsed: 0:07
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***************************************************************************
* Information from CCP4Interface script
***************************************************************************
The program run with command: refmac5 XYZIN
/home/crife/aps_0202/refine_nat/warp7abc.pdb XYZOUT
/tmp/crife/nat_tl_24_2_pdb_1.tmp HKLIN
/home/crife/aps_0202/refine_nat/warpNtrace_refmac6.mtz HKLOUT
/tmp/crife/nat_tl_24_4_mtz_1.tmp LIBOUT
/home/crife/aps_0202/refine_nat/warp7abc.cif
has failed with error message
child process exited abnormally
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