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Re: [ccp4bb]: how to prepare a structure-based sequence alignment

To: ccp4bb@dl.ac.uk
Subject: Re: [ccp4bb]: how to prepare a structure-based sequence alignment
From: Jason Maynes <jason@biochem.ualberta.ca>
Date: Tue, 2 Jul 2002 10:47:35 -0600 (MDT)
Sender: owner-ccp4bb@dl.ac.uk

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Hello:

The most accurate way for a structure-based alignment is to run your two
pdb's through the DALI server - http://www2.ebi.ac.uk/dali/.

There is also a program called mammoth that works well, but is tough to
get your hands on.

Cheers,
JTM

*************************
Jason Thomas Maynes
MD/PhD Program
Faculty of Medicine
University of Alberta
jason@biochem.ualberta.ca
*************************

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