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Re: [ccp4bb]: how to prepare a structure-based sequence alignment
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Stralign might be an option :
http://www.hgc.ims.u-tokyo.ac.jp/service/tooldoc/stralign/intro.html
( you might want to take a look at this as well:
http://www.prosci.uci.edu/Articles/Vol9/issue11/0235/0235.html )
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