Re: [ccp4bb]: protein topology diagram, references for DNA and sugar conformation

[Michael Sierk <mls5w@virginia.edu>]

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Steven,

The 3DNA manual has some nice pictograms of various DNA conformational 
terms.  It is also excellent for analyzing your DNA structure.

http://rutchem.rutgers.edu/~xiangjun/3DNA/index.html

Cheers,
Mike Sierk

On Tuesday, July 30, 2002, at 12:24  PM, Qian Xu wrote:

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> ***          CCP4 home page http://www.ccp4.ac.uk         ***
>
> I have two questions,
>
> 1) which program is used to plot the protein's topology diagram and 
> where
> I can get it.
>
> 2) anybody can point out some reference papers or good textbooks 
> regarding
> the DNA and sugar conformation? I am analyzing the structure of a DNA
> molecule and need to understand some technical terms like "shear"
> "stretch" "stagger" "C2'-endo" etc.
>
> Many thanks.
>
> regards,
> Q. Steven Xu
> Dept. of Physiology and Biophysics
> Boston Univ. School of Medicine
> Tel: (617)638-4083
> Fax: (617)638-4041
> E-mail: qianxu@bu.edu
>
>
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Michael Sierk, Postdoctoral Fellow        email: mls5w@virginia.edu
Biochemistry & Molecular Genetics Dept.   Phone(W):  (434) 924-2821
P.O. Box 800733                  			    (H):  (434) 970-2268
University of Virginia
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