Re: [ccp4bb]: homology modelling?

[<phubbard@post.its.mcw.edu>]

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MODELLER
THREADER2
SPDB (SWISSMODELLER)

The list goes on... I have used MODELLER a couple of times, and it seems to
work pretty well (comparing to the subsequently solved structure), though it
is pretty picky about data formats.

AGS

> I was wondering what is the easiest way to apply a homologous sequence
> to a known crystal structure to create a homology model?
>
>
******************************************************************************> Gloria Borgstahl
> Eppley Institute for Cancer Research
> 987696 Nebraska Medical Center
> 10732A Lied Transplant Center
> Omaha, NE 68198-7696
>
> Office (402) 559-8578
> FAX (402) 559-8577
>
> Associate Professor
> Interests:  Cancer, Biochemistry, DNA Metabolism,
> Protein Crystallography, Super-fine phi slicing, Synchrotron
> Radiation, Crystal Mosaicity, and X-ray Topography
>
******************************************************************************