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Re: [ccp4bb]: homology modelling?



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Another excellent web-based program is 3D-JIGSAW.

http://www.bmm.icnet.uk/servers/3djigsaw/


At 10:07 20/11/2002 -0600, phubbard@post.its.mcw.edu wrote:
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>MODELLER
>THREADER2
>SPDB (SWISSMODELLER)
>
>The list goes on... I have used MODELLER a couple of times, and it seems to
>work pretty well (comparing to the subsequently solved structure), though it
>is pretty picky about data formats.
>
>AGS
>
>> I was wondering what is the easiest way to apply a homologous sequence
>> to a known crystal structure to create a homology model?
>>
>>
>***************************************************************************
***> Gloria Borgstahl
>> Eppley Institute for Cancer Research
>> 987696 Nebraska Medical Center
>> 10732A Lied Transplant Center
>> Omaha, NE 68198-7696
>>
>> Office (402) 559-8578
>> FAX (402) 559-8577
>>
>> Associate Professor
>> Interests:  Cancer, Biochemistry, DNA Metabolism,
>> Protein Crystallography, Super-fine phi slicing, Synchrotron
>> Radiation, Crystal Mosaicity, and X-ray Topography
>>
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