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Re: [ccp4bb]: Making MR models



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> Is there a program that can take a molecular replacement model, read in 
> the target protein sequence and output a PDB file with all identical 
> residues conserved and the others Ser, Ala or Gly as appropriate (i.e. 
> as Moleman can already do, except the identical residues are output "as 
> is") We have done this kind of thing by hand previously but it is a bit 
> laborious.

SOD can produce a macro to have O do something like that for you;
see http://xray.bmc.uu.se/usf/sod_man.html#H11

there is also SEAMAN, see http://xray.bmc.uu.se/usf/seaman_man.html,
which you can instruct to replace (ranges of) residues

and you may want to read an old contribution to the CCP4 Newsletter
on this topic at http://xray.bmc.uu.se/usf/factory_6.html

--dvd

******************************************************************
                        Gerard J.  Kleywegt
    [Research Fellow of the Royal  Swedish Academy of Sciences]
Dept. of Cell & Molecular Biology  University of Uppsala
                Biomedical Centre  Box 596
                SE-751 24 Uppsala  SWEDEN

    http://xray.bmc.uu.se/gerard/  mailto:gerard@xray.bmc.uu.se
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