[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
Re: [ccp4bb]: Making MR models
*** For details on how to be removed from this list visit the ***
*** CCP4 home page http://www.ccp4.ac.uk ***
> Is there a program that can take a molecular replacement model, read in
> the target protein sequence and output a PDB file with all identical
> residues conserved and the others Ser, Ala or Gly as appropriate (i.e.
> as Moleman can already do, except the identical residues are output "as
> is") We have done this kind of thing by hand previously but it is a bit
> laborious.
SOD can produce a macro to have O do something like that for you;
see http://xray.bmc.uu.se/usf/sod_man.html#H11
there is also SEAMAN, see http://xray.bmc.uu.se/usf/seaman_man.html,
which you can instruct to replace (ranges of) residues
and you may want to read an old contribution to the CCP4 Newsletter
on this topic at http://xray.bmc.uu.se/usf/factory_6.html
--dvd
******************************************************************
Gerard J. Kleywegt
[Research Fellow of the Royal Swedish Academy of Sciences]
Dept. of Cell & Molecular Biology University of Uppsala
Biomedical Centre Box 596
SE-751 24 Uppsala SWEDEN
http://xray.bmc.uu.se/gerard/ mailto:gerard@xray.bmc.uu.se
******************************************************************
The opinions in this message are fictional. Any similarity
to actual opinions, living or dead, is purely coincidental.
******************************************************************