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[ccp4bb]: Refining Heteroligand ?



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Hi All,
I am refining my heteroligand (that contains 3 chains) with the rest of the 
structure. 
However, following refinement, I always find that one of the chains get 
displaced in such a manner that chain 1 and chain 2 are too far apart to form  
a bond.
Can I fix a part of the molecule (there's density for it) and refine the rest 
?
Pl. let me know.
Thanks very much,
Raji

Rajeswari Edayathumangalam
Dept. of Biochemistry & Molecular Biology
Colorado State University
Fort Collins, CO 80523 USA