AW: [ccp4bb]: Sequence Homology in B-factor column

[<Alexander.Pautsch@bc.boehringer-ingelheim.com>]

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Dear Wai,

check out ESPRIPT

http://prodes.toulouse.inra.fr/ESPript

good luck
alex

 Dr. Alexander Pautsch
 Protein Crystallography /Structural Research 
 Boehringer Ingelheim Pharma KG Deutschland 
 Birkendorferstrasse 65
 88400 BIBERACH, Germany 
 tel. +49 - (0)7351 - 54 4683 
 fax. +49 - (0)7351 - 83 4683
 email alexander.pautsch@bc.boehringer-ingelheim.com


> -----Ursprüngliche Nachricht-----
> Von:	Yu Wai Chen [SMTP:ywc@mrc-lmb.cam.ac.uk]
> Gesendet am:	Montag, 10. März 2003 12:00
> An:	CCP4
> Betreff:	[ccp4bb]: Sequence Homology in B-factor column
> 
> ***  For details on how to be removed from this list visit the  ***
> ***          CCP4 home page http://www.ccp4.ac.uk         ***
> 
> Dear all,
> 
> I would like to make a grasp surface picture of a protein coloured with a 
> measure of sequence homology of each residue.
> 
> I wonder if there is any program/server that allows me to upload a 
> coordinates file, and then do sequence comparison with this; and output
> the 
> extent of homology in the B-factor column of the original PDB file.  Then
> I 
> can use grasp to colour it.  Please advice on this or any other method
> that 
> I can use to make this picture.
> 
> Thanks a lot.
> 
> Wai
> ===================================================================
> Yu Wai CHEN, Ph.D. ..................   email:ywc@mrc-lmb.cam.ac.uk
>  Centre for Protein Engineering,             tel:+44-(0)1223-402148
>  MRC Centre, Hills Rd, Cambridge CB2 2QH, UK fax:+44-(0)1223-402140
>  WWW homepage: http://www.mrc-cpe.cam.ac.uk/~ywc