Re: [ccp4bb]: Problem to find a suitable solution by MR method

[Gerard DVD Kleywegt <gerard@xray.bmc.uu.se>]

***  For details on how to be removed from this list visit the  ***
***          CCP4 home page http://www.ccp4.ac.uk         ***

> After this, you could try to remove the most flexible parts from the search
> model (e.g. sorting the model.pdb by B-factors: sort -k11 model.pdb). If you
> want a poly-ala model, you can use pdbset to get it (EXCLUDE SIDE keyword).

for advice (and tools) on how to tailor your search model, check out ye olde
yarn "making the most of your search model" (from an old ccp4 newsletter) at
http://xray.bmc.uu.se/usf/factory_6.html

--dvd

******************************************************************
                        Gerard J.  Kleywegt
    [Research Fellow of the Royal  Swedish Academy of Sciences]
Dept. of Cell & Molecular Biology  University of Uppsala
                Biomedical Centre  Box 596
                SE-751 24 Uppsala  SWEDEN

    http://xray.bmc.uu.se/gerard/  mailto:gerard@xray.bmc.uu.se
******************************************************************
   The opinions in this message are fictional.  Any similarity
   to actual opinions, living or dead, is purely coincidental.
******************************************************************