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[ccp4bb]: how to control the size of ps file in npo?
Dear all,
Here I have a chance to ask for help to a problem with the old command-line ccp4 version at a brandnew era of ccp4i.
Year ago I produced some patterson maps for heavy atom harker peaks in P212121 space group. The ps file is fine when printed out, but when viewed with xpsview, the top portion is missing! Today I try to convert it to pdf format using acrobat distiller, the top portion in the pdf file is still missing.
I'm thinking of aligning different sections up so as to have a nice view of the heavy atom sites. Of cause, printing the images out and then scanning them back to computer is a way out. But it is really a clumsy one.
I'm attaching the input file and one of the problematic ps file here, wish anybody could give me a shortcut. In fact, I could not find a control line to specify the image site in npo. Would it be possible for me to get the control by modification of the ASCII ps file?
Thanks in advance.
Sincerely Yours,
Yong TANG
Yong TANG
A doctorate student at:
Division of Structural Biology
National Lab of Biomacromolecules
Institute of Biophysics, Chinese Academy of Sciences
15# Datun Road, Chaoyang District
Beijing 100101, P.R. China
Tel: 0086-10-64888511
E-mail: tang@moon.ibp.ac.cn
~~~~~~~~
#step05.com:
fft hklin step04.fhscal mapout step05.patt<<END-patt
patterson
resolution 9.0 4.0
exclude sig1 2.0 sig2 2.0 DIFF 243
title 9-4.0A Iso Diff Patt excl 3.0sig,Diso 243
GRID 40 128 128
labin F1=F_nat SIG1=SIGF_nat F2=F_c3hg SIG2=SIGF_c3hg
END-patt
mapmask mapin step05.patt mapout step05.patt_X<<END-x
AXIS Z Y X
XYZLIM 0.5 0.5 0.0 0.5 0.0 0.5
END-x
mapmask mapin step05.patt mapout step05.patt_Y<<END-y
AXIS X Z Y
XYZLIM 0.0 0.5 0.5 0.5 0.0 0.5
END-y
mapmask mapin step05.patt mapout step05.patt_Z<<END-z
AXIS Y X Z
XYZLIM 0.0 0.5 0.0 0.5 0.5 0.5
END-z
npo \
MAPIN step05.patt_X \
PLOT step05.plot_X \
<< END-npo_X
TITLE ISO Patt X Harker c3hg-LK 04/01/2k
# Contour map
MAP SCALE 2.5
CONTRS SIG 1.5 2.0 2.5 2.75 3.0 3.25 3.5 \
4.0 4.25 4.5 4.75 5.00 5.25 5.5 5.75 6.00 \
6.25 6.50 6.75 7.00 7.50 8.00 8.50
SECTNS 20 20 1
grid 0.05 0.05
PLOT
END-npo_X
npo \
MAPIN step05.patt_Y \
PLOT step05.plot_Y \
<< END-npo_y
TITLE ISO Patt Y Harker c3hg-LK 04/01/2k
# Contour map
MAP SCALE 2.5
#CONTRS SIG 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 \
#6.00 6.50 7.00 7.5 8.0 8.5 9.0
CONTRS SIG 1.5 2.0 2.5 2.75 3.0 3.25 3.5 3.75 4.0 4.25 \
4.5 4.75 5.00 5.25 5.5 5.75 6.00 6.25 6.50 6.75 \
7.00 7.25 7.5 7.75 8.00 8.25 8.5 8.75 9.0
SECTNS 64 64 1
grid 0.05 0.05
PLOT
END-npo_y
npo \
MAPIN step05.patt_Z \
PLOT step05.plot_Z \
<< END-npo_z
TITLE ISO Patt Z Harker c3hg-LK 04/01/2k
# Contour map
MAP SCALE 2.5
#CONTRS SIG 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 \
# 6.00 6.50 7.00 7.5 8.0 8.5 9.0
CONTRS SIG 1.5 2.0 2.5 2.75 3.0 3.25 3.5 3.75 4.0 4.25 \
4.5 4.75 5.00 5.25 5.5 5.75 6.00 6.25 6.50 6.75 \
7.00 7.25 7.5 7.75 8.00 8.25 8.5 8.75 9.0
SECTNS 64 64 1
grid 0.05 0.05
PLOT
END-npo_z
# pltdev -dev ps -aut -pen c -i step05.plot_X -o x.ps
# pltdev -dev ps -aut -pen c -i step05.plot_Y -o y.ps
# pltdev -dev ps -aut -pen c -i step05.plot_Z -o z.ps
c3hg-y.ps