Re: [ccp4bb]: REFMAC5 error: no associated filename

[Roy Lancaster <Roy.Lancaster@mpibp-frankfurt.mpg.de>]

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Hi Ed,

we have found that

setenv CDIC_REFMAC to_the_proper_directory

can help in such cases, and it may also in yours (I can't remember our
original error message).

Cheers,

Roy


Ed Mitchell wrote:

> ***  For details on how to be removed from this list visit the  ***
> ***          CCP4 home page http://www.ccp4.ac.uk         ***
>
>     Dear CCP4ers,
>
>     We've been trying to run REFMAC5 on a large structure. As a result
>     we've had to recompile with a larger number of chains. Once a
>     dictionary has been built for a haem and we run the actual
> refinement,
>     we obtain a logfile with the last lines as:
>
>   $TEXT:Warning: $$ comment $$
>   WARNING: CCPOPN Logical name /tmp/mitchell/refmac5_temp.08537_new1.crd
> has no
> associated file name
>   $$
> <!--SUMMARY_END--></FONT></B>
>  Open failed: Unit:   7, File: /tmp/mitchell/refmac5_temp.08537_new1.crd
> (logica
> l: /tmp/mitchell/refmac5_temp.08537_new1.crd)
> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
>  Last system error message:
>  No such file or directory
>  Refmac_5.0.36:   Open failed: File:
> /tmp/mitchell/refmac5_temp.08537_new1.crd
>  Times: User:    1475.8s System:    0.9s Elapsed:   24:43
> </pre>
> <!--SUMMARY_END--></FONT></B>
> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
> </html>
> <!--SUMMARY_END--></FONT></B>
>
>     We've tried adjusting the default scratch file to a number of places
> without success
>     (the previous dictionary creation stage runs fine and writes the new
> files to the
>     /tmp directories - so I do not think it is a permissions issue).
>
>     Has anyone come across this before or has any ideas please? Where
> are we
>     being daft??
>
>     thanks in advance,
>
>     cheerio ed.

--
C. Roy D. Lancaster, Max-Planck-Institute of Biophysics,
Dept. of Molecular Membrane Biology, Heinrich-Hoffmann-Str. 7,
D-60528 Frankfurt am Main, Germany. Tel.+49-69-96769-419(Fax: -423)