Re: [ccp4bb]: Protein alignment/secondary structure

[Salam Al-Karadaghi <Salam.Al-Karadaghi@mbfys.lu.se>]

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Hej Ditlev,

  Alscript is what you need:

http://www.compbio.dundee.ac.uk/index.htm

Regards,
Salam



At 09:41 2001-11-13 +0000, you wrote:
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>
>
>   I am looking for a program to automatically draw secondary structure
>above a linear protein sequence (or alignment) and output this as
>postscript. Ideally this should be using the secondary structure as
>defined in the PDB file, rather than calculated using H-bonds.
>
>   Has anybody heard of something like this?
>
>Thanks,
>
>   Ditlev
>
>---------------------------------------------------------------------------------
>Ditlev Brodersen, Ph.D                 Phone: +44 (0) 1223 252945
>Post-doctoral fellow                   Fax:   +44 (0) 1223 213556
>MRC Laboratory of Molecular Biology    Email: ding@mrc-lmb.cam.ac.uk
>Hills 
>Road                             WWW:   http://alf1.mrc-lmb.cam.ac.uk/~ding
>Cambridge, CB2 2QH
>United Kingdom




--------
Salam Al-Karadaghi, Assoc. Prof.
Molecular Biophysics,
Chemical Centre,
Lund University
Getingev. 60
PO Box 124, 221 00 Lund,
Sweden

Tel. Int+46 (0)462224512
Fax. Int+46 (0)462224692
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