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Re: [ccp4bb]: SUMMARY: Anisotropic B-factors
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Dear All,
Thank you very much for your suggestions on my question on how to plot
anisotropic B-factors as thermal ellipsoids. The following programs were
suggested to me:
ORTEP: http://www.ornl.gov/ortep/ortep.html
Mapview: http://www.chem.gla.ac.uk/~paule/chart/
xtalview: http://www.scripps.edu/pub/dem-web/toc.html
Rastep in RASTER3D : using the script: grep NAD file.pdb | rastep -auto
-Bcol 5. 35. > ellipsoids.r3d
render -jpeg <
ellipsoids.r3d > ellipsoids.jpeg
Xfit: http://www.ansto.gov.au/natfac/asrp7_xfit.html
I tried all the above programs and in my point of view the Rastep and Ortep
give nice graphic output for the B-factors.
Kostas
**********************************************
Konstantinos Beis
Centre for Biomolecular Sciences
University of St Andrews
North Haugh
St Andrews
FIFE KY16 9ST
tel: +44 1334 427265
email: kb11@st-andrews.ac.uk
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