Re: [ccp4bb]: dssp to pdb

[Kim Henrick <henrick@ebi.ac.uk>]

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On Sun, 24 Nov 2002, James Stroud wrote:


To all my apologies for the doss.tar.gz file
announced earlier - It was pointed out by James Stroud 
that I made a mess of this by leaving out a dummy
f90 module that replaces the oracle specific one built
by the api generator that reads the sql for read/write
and makes a cpp and an f file

The current www.ebi.ac.uk/~henrick/doss.tar.gz
does work now as the dummy gensqlapi.f is now included

the default Makefile is simple f90

kim

> Hi Kim,
> 
> I have tried very hard with a commercial F90 compiler. I setup my OS X box
> with Absoft Fortran 7.0 with F90. Absoft did not recognize the flag
> "-nomember_alignment". I removed the flag. I'm not sure what oracle is
> (database?). But still I tried a make with the default Makefile to see what
> would happen:
> 
> > make
> f90 -g  -c -o doss_params.o doss_params.f
> f90 -g  -c -o doss_structure.o doss_structure.f
> f90 -g  -c -o doss_sheet.o doss_sheet.f
> f90 -g  -c -o doss_oracle.o doss_oracle.f
> f90 -g  -c -o doss_common.o doss_common.f
> f90 -g  -c -o doss_pntrs.o doss_pntrs.f
> ln -fs ./../dbdev/src/sqlwrap/dbUtils.js .
> env CLASSPATH=/jdbc/lib/classes111.zip js
> ./../dbdev/src/sqlwrap/apiGenerator.js
> env: js: No such file or directory
> make: *** [prototype.f] Error 127
> 
> I assume the jdbc has something to do with "_d_ata_b_ase" and hence oracle.
> So I made clean then copied "Makefile.no_oracle" to "Makefile". The file
> looked like a straightforward build, but:
> 
> > make
> f90 ''  -c -o doss_params.o doss_params.f
> f90 ''  -c -o doss_structure.o doss_structure.f
> f90 ''  -c -o doss_sheet.o doss_sheet.f
> f90 ''  -c -o doss_oracle.o doss_oracle.f
> f90 ''  -c -o doss_common.o doss_common.f
> f90 ''  -c -o doss_pntrs.o doss_pntrs.f
> make: *** No rule to make target `gensqlapi.o', needed by `doss.o'.  Stop.
> 
> No source for "gensqlapi.o" is provided in the tarfile from
> <http://www.ebi.ac.uk/~henrick/doss.tar.gz>. Nothing in the README file
> explains how to obtain this source code.
> 
> Hence it failed to build after a reasonable effort.
> 
> James
> 
> On 11/21/02 2:32 AM, "Kim Henrick" <henrick@ebi.ac.uk> wrote:
> 
> > 
> > re your reference that doss fails to compile
> > could you please send details - here it compiles
> > with any f90 compiler and is used in linux with
> > the intel f90 as well as sun/sgi/compaq f90
> > 
> > if you have an f90 compiler that fails
> > with this code please send details
> > 
> > kim henrick
> 
> --------------------------------------------------------
> "Research: If it worked the first time,
> they would just call it 'search'."     -Roy Garcia
> --------------------------------------------------------
>  James C. Stroud
>  Department of Chemistry and Biochemistry
>  University of Colorado at Boulder
>  Boulder, CO 80309
> 
>  Tel: 303-492-4503      Fax: 303-735-1347
> --------------------------------------------------------
> 
> 

Kim HENRICK    henrick@ebi.ac.uk ::telephone:  +44 (0) 1223 494629