[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[ccp4bb]: AmoRe Solution problems



***  For details on how to be removed from this list visit the  ***
***          CCP4 home page http://www.ccp4.ac.uk         ***

Dear all,
Does anyone know how to apply the AmoRe solution results to the original starting model ?
I can't find such function in the AmoRe. 

After the reorientation function in the AmoRe the program gives the solution list as following:
SOLUTION_SHIFT  1  271.88  92.23  121.83  4.87    81.10   -49.42  12.8  55.9

I use the CCP4 program pdbset to reorientate the original starting model like this
Pdbset xyzin start.pdb xyzout end.pdb <<eof
rotate  euler  271.88  92.23  121.83
shift       4.87    81.10   -49.42
eof

But the reorientated result seems wrong.  I am eager for any advise.

And what about the solution list give by CNS after its translate function. I am just confused how to apply the solution results to original starting model  Could anyone help me?

CNS translation results like this
Result th1 th2 th3 x y z  monitor packing

I use pdbset program to reorientate the original starting model like this:
Pdbset xyzin start.pdb xyzout end.pdb <<eof
Rotate euler th1 th2 th3
Shift x y z
eof

But the end.pdb doesn't accord to the translated model produced by CNS own. What's wrong with me? Could anyone point out?
 Thanks very much!


        Yunqing Liu
        yqliu@sibs.ac.cn
          2003-04-18