Clipper
clipper_stats.h
00001 
00004 //C Copyright (C) 2000-2006 Kevin Cowtan and University of York
00005 //L
00006 //L  This library is free software and is distributed under the terms
00007 //L  and conditions of version 2.1 of the GNU Lesser General Public
00008 //L  Licence (LGPL) with the following additional clause:
00009 //L
00010 //L     `You may also combine or link a "work that uses the Library" to
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00012 //L     that work under terms of your choice, provided that you give
00013 //L     prominent notice with each copy of the work that the specified
00014 //L     version of the Library is used in it, and that you include or
00015 //L     provide public access to the complete corresponding
00016 //L     machine-readable source code for the Library including whatever
00017 //L     changes were used in the work. (i.e. If you make changes to the
00018 //L     Library you must distribute those, but you do not need to
00019 //L     distribute source or object code to those portions of the work
00020 //L     not covered by this licence.)'
00021 //L
00022 //L  Note that this clause grants an additional right and does not impose
00023 //L  any additional restriction, and so does not affect compatibility
00024 //L  with the GNU General Public Licence (GPL). If you wish to negotiate
00025 //L  other terms, please contact the maintainer.
00026 //L
00027 //L  You can redistribute it and/or modify the library under the terms of
00028 //L  the GNU Lesser General Public License as published by the Free Software
00029 //L  Foundation; either version 2.1 of the License, or (at your option) any
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00032 //L  This library is distributed in the hope that it will be useful, but
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00035 //L  Lesser General Public License for more details.
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00037 //L  You should have received a copy of the CCP4 licence and/or GNU
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00040 //L  The GNU Lesser General Public can also be obtained by writing to the
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00043 
00044 
00045 #ifndef CLIPPER_STATS
00046 #define CLIPPER_STATS
00047 
00048 
00049 #include "clipper_types.h"
00050 
00051 
00052 namespace clipper
00053 {
00054 
00056   template<class T = ftype> class Range
00057   {
00058   public:
00060     inline Range() { lmin = 999999999; lmax = -999999999; }
00062     inline Range( const T& min, const T& max ) { lmin = min; lmax = max; }
00063     inline const T& min() const { return lmin; } 
00064     inline const T& max() const { return lmax; } 
00065     inline T range() const { return lmax-lmin; } 
00066 
00067     inline void include( const T& datum )
00068       { lmin = (datum<lmin)?datum:lmin; lmax = (datum>lmax)?datum:lmax; }
00070     inline bool contains( const T& datum ) const
00071       { return ( datum >= lmin && datum <= lmax ); }
00073     inline T truncate( const T& datum ) const
00074       { return Util::bound( lmin, datum, lmax ); }
00075   private:
00076     T lmin, lmax;
00077   };
00078 
00080   class Range_sampling : public Range<ftype>
00081   {
00082   public:
00084     inline Range_sampling() : n_(0) {}
00086     inline Range_sampling( const int& n ) : n_(n) {}
00088     inline Range_sampling( const Range<ftype>& range, const int& n ) :
00089       Range<ftype>( range ), n_(n) {}
00091     inline ftype indexf( const ftype& x ) const
00092       { return ftype(size())*(x-min())/range(); }
00094     inline ftype x( const ftype& i ) const
00095       { return range()*i/ftype(size())+min(); }
00097     inline int index( const ftype& x ) const { return Util::intf( indexf(x) ); }
00099     inline int index_bounded( const ftype& x ) const
00100       { return Util::bound( 0, Util::intf( indexf(x) ), size()-1 ); }
00102     inline ftype x( const int& i ) const     { return x( ftype(i)+0.5 ); }
00104     inline ftype x_min( const int& i ) const { return x( ftype(i)     ); }
00106     inline ftype x_max( const int& i ) const { return x( ftype(i)+1.0 ); }
00108     inline int size() const { return n_; }
00109   private:
00110     int n_;
00111   };
00112 
00114 
00117   class Histogram : public Range_sampling
00118   {
00119   public:
00121     Histogram() {}
00123     Histogram( const Range<ftype>& range, const int& n ) :
00124       Range_sampling( range, n ), data( n, 0.0 ) {}
00126     void accumulate( const ftype& x )
00127       { if ( contains(x) ) data[ index_bounded(x) ] += 1.0; }
00129     void accumulate( const ftype& x, const ftype& w )
00130       { if ( contains(x) ) data[ index_bounded(x) ] += w; }
00132     ftype sum() const;
00134     inline const ftype& y( const int& i ) const { return data[i]; }
00136     ftype y( const ftype& x ) const;
00138     const Histogram& operator += ( const Histogram& h );
00139     // inherited functions listed for documentation purposes
00140     //-- inline ftype x( const int& i ) const;
00141     //-- inline ftype x_min( const int& i ) const;
00142     //-- inline ftype x_max( const int& i ) const;
00143     //-- inline int size() const;
00144   private:
00145     std::vector<ftype> data;
00146   };
00147 
00148 
00150 
00163   class Generic_ordinal
00164   {
00165   public:
00167     Generic_ordinal() {}
00169     Generic_ordinal( const Range<ftype>& range, const int& n )
00170       { init( range, n ); }
00172     void init( const Range<ftype>& range, const int num_ranges = 1000 );
00174     void init( const std::vector<ftype>& values, const int num_ranges = 1000 );
00176     ftype ordinal( const ftype& value ) const;
00177 
00179     void accumulate( const ftype& value );
00181     void accumulate( const ftype& value, const ftype& weight );
00183     void prep_ordinal();
00185     void invert();
00186 
00188     void init( const int num_ranges = 1000 );
00190     void add_pass_1( const ftype& value );
00192     void add_pass_2( const ftype& value );
00193   protected:
00194     ftype nranges;            
00195     Range<ftype> range_;      
00196     std::vector<ftype> hist;  
00197   };
00198 
00199 
00200 
00201 } // namespace clipper
00202 
00203 #endif