| clipper::datatypes::ABCD< dtype > | Reflection data type: Hendrickson-Lattman coeff |
| clipper::Array2d< T > | Simple 2-d array class |
| clipper::Atom | Atom class |
| clipper::Atom_list | Atom list class |
| clipper::AtomSF | Atomic scattering factor object |
| clipper::AtomShapeFn | Atomic shape function object |
| clipper::BasisFn_aniso_gaussian | Simple anisotropic Gaussian basis function |
| clipper::BasisFn_base | Abstract base class for resolution function basis functions |
| clipper::BasisFn_binner | Simple binning basis function |
| clipper::BasisFn_expcubic | Simple Expcubic basis function |
| clipper::BasisFn_gaussian | Simple Gaussian basis function |
| clipper::BasisFn_linear | Simple linear basis function |
| clipper::BasisFn_log_aniso_gaussian | Simple anisotropic Gaussian basis function |
| clipper::BasisFn_log_gaussian | Simple log Gaussian basis function |
| clipper::BasisFn_spline | Simple smooth basis function |
| clipper::CCell | CCell container |
| clipper::Cell | Cell object |
| clipper::Cell_descr | Cell description (automatically converts to radians) |
| clipper::CGrid_sampling | CGrid_sampling container |
| clipper::CHKL_data< T > | Reflection data list container |
| clipper::CHKL_info | HKL list and indexing object container |
| clipper::ClipperInstance | |
| clipper::ClipperInstantiator | |
| clipper::CNXmap< T > | Non-Crystallographic map container |
| clipper::CNXmap_operator< T > | Non-Crystallographic map operator container |
| clipper::Compare_grid | |
| clipper::datatypes::Compute_abcd_from_phifom< dtype > | Compute from Phi_fom to ABCD ( C = D = 0 ) |
| clipper::datatypes::Compute_add_abcd< dtype > | Add two ABCD datalists |
| clipper::datatypes::Compute_add_fphi< dtype > | Add two F_phi datalists |
| clipper::datatypes::Compute_diff_fsigf_from_fsigfano< dtype > | Compute from F_sigF_anom to F_sigF (difference structure factor) |
| clipper::datatypes::Compute_EsigE_from_FsigF< dtype > | Compute from F_sigF to E_sigE |
| clipper::datatypes::Compute_fphi_from_fsigf_phifom< dtype > | Compute from F_sigF+Phi_fom to F_phi |
| clipper::datatypes::Compute_FsigF< dtype, T > | Compute from F_sigF to F_sigF |
| clipper::datatypes::Compute_mean_fsigf_from_fsigfano< dtype > | Compute from F_sigF_anom to F_sigF (mean structure factor) |
| clipper::datatypes::Compute_neg_fphi< dtype > | Negate F_phi (i.e. advance phase by pi) |
| clipper::datatypes::Compute_phifom_from_abcd< dtype > | Compute from ABCD to Phi_fom by phase integration (loses bimodality) |
| clipper::datatypes::Compute_scale_u< T > | |
| clipper::datatypes::Compute_scale_u_aniso< T > | Apply scale and U to any scalable datatype |
| clipper::datatypes::Compute_scale_u_iso< T > | Apply scale and U to any scalable datatype |
| clipper::datatypes::Compute_sub_fphi< dtype > | Subtract two F_phi datalists |
| clipper::Container | Definition for a generic container Object |
| clipper::Coord_frac | Fractional (cell) coordinates |
| clipper::Coord_grid | Grid coordinate |
| clipper::Coord_map | Map coordinate: this is like Coord_grid, but non-integer |
| clipper::Coord_orth | Orthogonal (Angstrom) coordinates |
| clipper::Coord_reci_frac | Fractional reciprocal coordinate (i.e. non-integer hkl) |
| clipper::Coord_reci_orth | Orthogonal reciprocal coordinate (length of which is invresolsq) |
| clipper::CResolution | Resolution container |
| clipper::CSpacegroup | Spacegroup container |
| clipper::Curv_frac< T > | Fractional (cell) curvatures, with respect to fractional u,v,w |
| clipper::Curv_map< T > | Map coordinate curvatures, with respect to grid u,v,w |
| clipper::Curv_orth< T > | Orthogonal (Angstom) curvatures, with respect to orthogonal x,y,z |
| clipper::CXmap< T > | Crystallographic map container |
| clipper::datatypes::D_sigD< dtype > | |
| clipper::Datatype_base | Reflection data type objects |
| clipper::datatypes::E_sigE< dtype > | Reflection data type: E + sigE |
| clipper::datatypes::E_sigE_ano< dtype > | Reflection data type: E(+) E(+) sigE(+) sigE(-) cov+- |
| clipper::Euler< T > | Euler angle class |
| clipper::Euler_ccp4 | Euler_ccp4 angle class |
| clipper::datatypes::F_phi< dtype > | Reflection data type: F + phi model or map coeff (e.g. Fcalc, Fbest) |
| clipper::datatypes::F_sigF< dtype > | Reflection data type: F + sigF |
| clipper::datatypes::F_sigF_ano< dtype > | Reflection data type: F(+) F(+) sigF(+) sigF(-) cov+- |
| clipper::BasisFn_base::Fderiv | Object holding the basis function and its first two derivatives |
| clipper::FFTmap | FFTmap: P1 map with symmetry used for calculating FFTs |
| clipper::FFTmap_base | |
| clipper::FFTmap_p1 | FFTmap_p1: low level P1 map used for calculating FFTs |
| clipper::FFTmap_sparse_p1_base | Base type for sparse P1 fft maps |
| clipper::FFTmap_sparse_p1_hx | FFTmap_sparse_p1_hx: low level sparse P1 map used for calculating FFTs |
| clipper::FFTmap_sparse_p1_xh | FFTmap_sparse_p1_xh: low level sparse P1 map used for calculating FFTs |
| clipper::datatypes::Flag | Reflection data type: Free-R flag |
| clipper::datatypes::Flag_bool | Reflection data type: boolean (false = missing) |
| clipper::Generic_ordinal | Generic ordinal gernerator |
| clipper::Grad_frac< T > | Fractional (cell) gradient, with respect to fractional u,v,w |
| clipper::Grad_map< T > | Map coordinate gradient, with respect to grid u,v,w |
| clipper::Grad_orth< T > | Orthogonal (Angstom) gradient, with respect to orthogonal x,y,z |
| clipper::Grid | Generic grid |
| clipper::Grid_range | Grid range class: defines array limits for a grid |
| clipper::Grid_sampling | Grid sampling of a unit cell |
| clipper::Histogram | General histogram class |
| clipper::HKL | Reflection 'Miller' index |
| clipper::HKL_class | Reflection class |
| clipper::HKL_data< T > | HKL_data<> |
| clipper::HKL_data_base | HKL_data_base |
| clipper::HKL_data_cacheobj | |
| clipper::HKL_info | HKL list container and tree root |
| clipper::HKL_lookup | Fast reflection lookup object |
| clipper::HKL_info::HKL_reference_base | HKL reference base class |
| clipper::HKL_info::HKL_reference_coord | HKL reference with coord-like behaviour |
| clipper::HKL_info::HKL_reference_index | HKL reference with index-like behaviour |
| clipper::HKL_sampling | HKL sampling of reciprocal space |
| clipper::HKL_lookup::hlookup | Lookup on h |
| clipper::datatypes::I_sigI< dtype > | Reflection data type: I + sigI |
| clipper::datatypes::I_sigI_ano< dtype > | Reflection data type: I(+) I(+) sigI(+) sigI(-) cov+- |
| clipper::Interp_cubic | Wrapper class for third-order (cubic) interpolation fns |
| clipper::Interp_linear | Wrapper class for first-order (linear) interpolation fns |
| clipper::Interp_nearest | Wrapper class for zeroth-order (nearest neighbour) interpolation fns |
| clipper::Isymop | Integerised symmetry matrix |
| clipper::Xmap_cacheobj::Key | |
| clipper::HKL_data_cacheobj::Key | |
| clipper::HKL_lookup::klookup | Lookup on k |
| clipper::data::LGdata | |
| clipper::HKL_lookup::llookup | Lookup on l |
| clipper::LogPhaseProb< N > | Log phase probability distribution object |
| clipper::Map_index_sort | Generic map sorting class |
| clipper::Xmap_base::Map_reference_base | Map reference base class |
| clipper::NXmap_base::Map_reference_base | Map reference base class |
| clipper::NXmap_base::Map_reference_coord | Map reference with coordinate-like behaviour |
| clipper::Xmap_base::Map_reference_coord | Map reference with coordinate-like behaviour |
| clipper::Xmap_base::Map_reference_index | Map reference with index-like behaviour |
| clipper::NXmap_base::Map_reference_index | Map reference with index-like behaviour |
| clipper::Map_stats | Generic map statistics class |
| clipper::Mat33< T > | 3x3-matrix class |
| clipper::Mat33sym< T > | Compressed form for 3x3 symmetric matrix class |
| clipper::Matrix< T > | General matrix class: like Array2d but with numerical methods |
| clipper::Message | Message handler class |
| clipper::Message_base | Base type for messages |
| clipper::Message_ctor | Constructor message (level = 2) |
| clipper::Message_dtor | Destructor message (level = 2) |
| clipper::Message_fatal | Fatal message (level = 9) |
| clipper::Message_generic | Generic message |
| clipper::Message_info | Info message (level = 1) |
| clipper::Message_warn | Warning message (level = 5) |
| clipper::Metric_tensor | Metric tensor |
| clipper::Mutex | Mutex class: used for locking and unlocking shared resources |
| clipper::NX_operator | NX_operator: non-crystal map operator |
| clipper::NXmap< T > | NXmap<T>: actual non-crystallographic map class |
| clipper::NXmap_base | NXmap_base: base for non-crystallographic map class |
| clipper::NXmap_operator< T > | NXmap_operator: non-crystal map operator referencing a particular NXmap |
| clipper::ObjectCache< T > | Object Cache manager |
| clipper::datatypes::Phi_fom< dtype > | Reflection data type: best phi + fom |
| clipper::Polar_ccp4 | Polar_ccp4 angle class |
| clipper::Prob_phi_2d | 2-d angular probability distibution class |
| clipper::Property< T > | Template for a property holding an arbitrary type |
| clipper::Property_base | Base class for properties of arbitrary types |
| clipper::PropertyManager | Class for holding a list of labelled properties of arbitrary types |
| clipper::Ramachandran | Ramachandran plot class |
| clipper::Range< T > | Range - upper and lower bounds of some type |
| clipper::Range_sampling | Range sampling: discrete sampling of a real range |
| clipper::TargetFn_base::Rderiv | Object holding the residual function and first two derivatives |
| clipper::ObjectCache< T >::Reference | ObjectCache reference class |
| clipper::Resolution | Resolution in angstroms |
| clipper::Resolution_ordinal | Resolution ordinal gernerator |
| clipper::ResolutionFn | 2nd order resolution function evaluator |
| clipper::ResolutionFn_nonlinear | 2nd order resolution function evaluator |
| clipper::Rotation | Rotation class |
| clipper::RTop< T > | Rotation-translation operator |
| clipper::RTop_frac | Fractional operator class |
| clipper::RTop_orth | Orthogonal operator class |
| clipper::data::SFdata | |
| clipper::data::SGdata | |
| clipper::Spacegroup | Spacegroup object |
| clipper::Spgr_cacheobj | |
| clipper::Spgr_descr | Spacegroup description |
| clipper::String | String extension with simple parsing methods |
| clipper::Symop | Crystallographic symmetry operator |
| clipper::Symop_code | Compressed encoded symmetry operator |
| clipper::Spgr_descr::Symop_codes | Vector of symop codes and associated methods |
| clipper::TargetFn_base | Abstract base class for least-squares resolution function target functions |
| clipper::TargetFn_meanEnth< T > | Simple mean |E|n target |
| clipper::TargetFn_meanFnth< T > | Simple mean |F|n target |
| clipper::TargetFn_scaleEsq< T > | |E|2 scaling target |
| clipper::TargetFn_scaleF1F2< T1, T2 > | |F|2 scaling target |
| clipper::TargetFn_scaleI1I2< T1, T2 > | |
| clipper::TargetFn_scaleLogF1F2< T1, T2 > | Log |F|2 scaling target |
| clipper::TargetFn_scaleLogI1I2< T1, T2 > | Log |I| scaling target |
| clipper::TargetFn_sigmaa< T > | |
| clipper::TargetFn_sigmaa_omegaa< T > | |
| clipper::Test_base | Base class for clipper self-test classes |
| clipper::Test_core | |
| clipper::data::Test_data | Class to return test data |
| clipper::data::TESThkldata | |
| clipper::data::TESTxyzdata | |
| clipper::Thread_base | Thread base class: Override this to create new threads |
| clipper::U_aniso_frac | Anisotropic fractional atomic displacement parameters |
| clipper::U_aniso_orth | Anisotropic orthogonal atomic displacement parameters |
| clipper::Util | Utility class |
| clipper::Vec3< T > | 3-vector class |
| clipper::Xmap< T > | Xmap<T>: actual crystallographic map class |
| clipper::Xmap_base | Xmap_base: base for crystallographic map class |
| clipper::Xmap_cacheobj | |
