2-d angular probability distibution class More...
#include <ramachandran.h>
Public Member Functions | |
| void | init (const int &size) |
| initialise: with sampling | |
| void | accumulate (const ftype32 table[]) |
| accumulate new table of samples to probability | |
| void | accumulate (const ftype &phi1, const ftype &phi2, ftype wgt=1.0) |
| accumulate new sample to probability | |
| void | normalise () |
| normalise to integrate to 1/(2pi)^2 | |
| ftype | probability (const ftype &phi1, const ftype &phi2) const |
| get probability for a particular pair of angles | |
| String | format () const |
| formatted string representation (as C++ code) | |
| const ftype & | data (const int &i, const int &j) const |
| 2d read access | |
| ftype & | data (const int &i, const int &j) |
| 2d write access | |
Detailed Description
2-d angular probability distibution class
Base for Ramachandran class (and other similar classes, such as a pseudo-ramachandran plot or the JPD of two phases ).
Member Function Documentation
accumulate new sample to probability
linear interpolation onto grid
References data(), clipper::Util::intf(), clipper::Util::mod(), and clipper::Util::twopi().
| void clipper::Prob_phi_2d::normalise | ( | ) |
normalise to integrate to 1/(2pi)^2
normalise mean value to 1/(2pi)^2
References clipper::Util::twopi().
Referenced by clipper::Ramachandran::init().
get probability for a particular pair of angles
linear interpolation off of grid
Reimplemented in clipper::Ramachandran.
References data(), clipper::Util::intf(), clipper::Util::mod(), and clipper::Util::twopi().
The documentation for this class was generated from the following files:
- ramachandran.h
- ramachandran.cpp
