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[ccp4bb]: REFMAC error resolved.
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Hi again,
Thanks to the people mailed in suggestions for the REFMAC
no associated file name error. The solution below is from Garib:
> That is exactly why I asked log file. I guess number of atoms is 40001. Limit
> for maximum number of atoms is 40000.
> If you have low res use MAKE HYDRogens NO.
> Or you change MAXATOM in atom_com.fh to higher value and QQA in the
> pls_incl.fh to the same value. Remove all *.o
> and compile again. Then problem will go away. We will give sensible message
> for the next version.
>
> Regards
> Garib
>
cheerio ed.
> Dear CCP4ers,
>
> We've been trying to run REFMAC5 on a large structure. As a result
> we've had to recompile with a larger number of chains. Once a
> dictionary has been built for a haem and we run the actual
> refinement,
> we obtain a logfile with the last lines as:
>
> $TEXT:Warning: $$ comment $$
> WARNING: CCPOPN Logical name
/tmp/mitchell/refmac5_temp.08537_new1.crd
> has no
> associated file name
> $$
> <!--SUMMARY_END--></FONT></B>
> Open failed: Unit: 7, File:
/tmp/mitchell/refmac5_temp.08537_new1.crd
> (logica
> l: /tmp/mitchell/refmac5_temp.08537_new1.crd)
> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
> Last system error message:
> No such file or directory
> Refmac_5.0.36: Open failed: File:
> /tmp/mitchell/refmac5_temp.08537_new1.crd
> Times: User: 1475.8s System: 0.9s Elapsed: 24:43
> </pre>
> <!--SUMMARY_END--></FONT></B>
> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
> </html>
> <!--SUMMARY_END--></FONT></B>
>
> We've tried adjusting the default scratch file to a number of
places
> without success
> (the previous dictionary creation stage runs fine and writes the
new
> files to the
> /tmp directories - so I do not think it is a permissions issue).
>
> Has anyone come across this before or has any ideas please? Where
> are we
> being daft??
>
> thanks in advance,
>
> cheerio ed.