[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[ccp4bb]: REFMAC error resolved.



***  For details on how to be removed from this list visit the  ***
***          CCP4 home page http://www.ccp4.ac.uk         ***


    Hi again,

    Thanks to the people mailed in suggestions for the REFMAC
    no associated file name error. The solution below is from Garib:


> That is exactly why I asked log file. I guess number of atoms is 40001. Limit
> for maximum number of atoms is 40000.
> If you have low res use MAKE HYDRogens NO.
> Or you change MAXATOM in atom_com.fh to higher value and QQA in the
> pls_incl.fh to the same value. Remove all *.o
> and compile again. Then problem will go away. We will give sensible message
> for the next version.
>
> Regards
> Garib
>

    cheerio ed.


>     Dear CCP4ers,
>
>     We've been trying to run REFMAC5 on a large structure. As a result

>     we've had to recompile with a larger number of chains. Once a
>     dictionary has been built for a haem and we run the actual
> refinement,
>     we obtain a logfile with the last lines as:
>
>   $TEXT:Warning: $$ comment $$
>   WARNING: CCPOPN Logical name
/tmp/mitchell/refmac5_temp.08537_new1.crd
> has no
> associated file name
>   $$
> <!--SUMMARY_END--></FONT></B>
>  Open failed: Unit:   7, File:
/tmp/mitchell/refmac5_temp.08537_new1.crd
> (logica
> l: /tmp/mitchell/refmac5_temp.08537_new1.crd)
> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
>  Last system error message:
>  No such file or directory
>  Refmac_5.0.36:   Open failed: File:
> /tmp/mitchell/refmac5_temp.08537_new1.crd
>  Times: User:    1475.8s System:    0.9s Elapsed:   24:43
> </pre>
> <!--SUMMARY_END--></FONT></B>
> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
> </html>
> <!--SUMMARY_END--></FONT></B>
>
>     We've tried adjusting the default scratch file to a number of
places
> without success
>     (the previous dictionary creation stage runs fine and writes the
new
> files to the
>     /tmp directories - so I do not think it is a permissions issue).
>
>     Has anyone come across this before or has any ideas please? Where
> are we
>     being daft??
>
>     thanks in advance,
>
>     cheerio ed.