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Re: [ccp4bb]: AMORE translation function
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You mean this output?
Translation solutions sorted by correlation coefficients
TABLE Alpha Beta Gamma Tx Ty Tz Corr_F
Rfac Corr_I Pkcount Dmin
SOLUTIONTF1 1 38.05 76.83 145.27 0.1406 0.4062 0.0000 29.7
54.4 30.1 16 44.9
Bother - why does my netscape doing this wrap round??
But anyway -
Pkcount is just the relative height of the peak in the translation
function map - the first 20 are checked for Corr Coeffs etc..
And Dmin is the smallest distance for the centr of mass of this solution
from its symmetry partners..
Shekhar C. Mande wrote:
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> *** CCP4 home page http://www.ccp4.ac.uk ***
> Hi All,
> The output of AMORE TRAFUN lists several numbers on one line- 3
> rotational and 3 translational parameters, correlation coefficients on
> F's and I's, and R-factor on F's. There is also a packing index listed on
> a scale of 1-10. I am sure there some description of this packing index,
> can someone write to me about it directly?
> Shekhar C. Mande, Ph. D. Phone:
> Centre for DNA Fingerprinting +91-40-27171442 (O)
> and Diagnostics +91-40-27158535 (R)
> ECIL Road, Nacharam
> Hyderabad- 500 076 INDIA Facsimile:
> Email: email@example.com +91-40-27155610