Clipper
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00001 00004 //C Copyright (C) 2000-2006 Kevin Cowtan and University of York 00005 //L 00006 //L This library is free software and is distributed under the terms 00007 //L and conditions of version 2.1 of the GNU Lesser General Public 00008 //L Licence (LGPL) with the following additional clause: 00009 //L 00010 //L `You may also combine or link a "work that uses the Library" to 00011 //L produce a work containing portions of the Library, and distribute 00012 //L that work under terms of your choice, provided that you give 00013 //L prominent notice with each copy of the work that the specified 00014 //L version of the Library is used in it, and that you include or 00015 //L provide public access to the complete corresponding 00016 //L machine-readable source code for the Library including whatever 00017 //L changes were used in the work. (i.e. If you make changes to the 00018 //L Library you must distribute those, but you do not need to 00019 //L distribute source or object code to those portions of the work 00020 //L not covered by this licence.)' 00021 //L 00022 //L Note that this clause grants an additional right and does not impose 00023 //L any additional restriction, and so does not affect compatibility 00024 //L with the GNU General Public Licence (GPL). If you wish to negotiate 00025 //L other terms, please contact the maintainer. 00026 //L 00027 //L You can redistribute it and/or modify the library under the terms of 00028 //L the GNU Lesser General Public License as published by the Free Software 00029 //L Foundation; either version 2.1 of the License, or (at your option) any 00030 //L later version. 00031 //L 00032 //L This library is distributed in the hope that it will be useful, but 00033 //L WITHOUT ANY WARRANTY; without even the implied warranty of 00034 //L MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00035 //L Lesser General Public License for more details. 00036 //L 00037 //L You should have received a copy of the CCP4 licence and/or GNU 00038 //L Lesser General Public License along with this library; if not, write 00039 //L to the CCP4 Secretary, Daresbury Laboratory, Warrington WA4 4AD, UK. 00040 //L The GNU Lesser General Public can also be obtained by writing to the 00041 //L Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, 00042 //L MA 02111-1307 USA 00043 00044 00045 #ifndef CLIPPER_HKL_INFO 00046 #define CLIPPER_HKL_INFO 00047 00048 00049 #include "hkl_lookup.h" 00050 00051 00052 namespace clipper 00053 { 00054 class HKL_data_base; 00055 00056 00058 00062 class HKL_info 00063 { 00064 public: 00066 HKL_info(); 00068 HKL_info( const Spacegroup& spacegroup, const Cell& cell, const Resolution& resolution, const bool& generate = false ); 00070 void init( const Spacegroup& spacegroup, const Cell& cell, const Resolution& resolution, const bool& generate = false ); 00072 void init( const Spacegroup& spacegroup, const Cell& cell, const HKL_sampling& hkl_sampling, const bool& generate = true ); 00073 00075 bool is_null() const; 00076 00078 const Cell& cell() const { return cell_; } 00080 const Spacegroup& spacegroup() const { return spacegroup_; } 00082 const HKL_sampling& hkl_sampling() const { return hkl_sampling_; } 00084 const Resolution& resolution() const { return resolution_; } 00085 00087 void generate_hkl_list(); 00089 void add_hkl_list( const std::vector<HKL>& add ); 00090 00092 inline int num_reflections() const { return hkl.size(); } 00093 00095 00096 inline const HKL& hkl_of( const int& index ) const { return hkl[index]; } 00098 00100 inline int index_of( const HKL& rfl ) const 00101 { return lookup.index_of( rfl ); } 00102 00104 inline const ftype32& invresolsq( const int& index ) const 00105 { return invresolsq_lookup[index]; } 00107 inline const Range<ftype>& invresolsq_range() const 00108 { return invresolsq_range_; } 00110 const HKL_class& hkl_class( const int& index ) const 00111 { return hkl_class_lookup[index]; } 00113 HKL find_sym( const HKL& rfl, int& sym, bool& friedel ) const; 00114 00115 00117 00121 class HKL_reference_base 00122 { 00123 public: 00125 inline const HKL_info& base_hkl_info() const { return *hklinfo; } 00127 inline const int& index() const { return index_; } 00129 inline ftype invresolsq( const HKL_data_base& hkldata ) const; 00131 inline ftype invresolsq() const 00132 { return hklinfo->invresolsq( index_ ); } 00134 inline bool last() const 00135 { return ( index_ >= hklinfo->num_reflections() ); } 00136 protected: 00137 const HKL_info* hklinfo; 00138 int index_; 00139 }; 00140 00142 00151 class HKL_reference_index : public HKL_reference_base 00152 { 00153 public: 00155 HKL_reference_index() {} 00157 HKL_reference_index( const HKL_info& hklinfo_, const int& index ) 00158 { hklinfo = &hklinfo_; index_ = index; } 00160 inline const HKL& hkl() const { return hklinfo->hkl_of( index_ ); } 00162 inline const HKL_class& hkl_class() const 00163 { return hklinfo->hkl_class( index_ ); } 00165 inline HKL_reference_index& next() { index_++; return *this; } 00166 // inherited functions listed for documentation purposes 00167 //-- const HKL_info& base_hkl_info() const; 00168 //-- const int& index() const; 00169 //-- const ftype invresolsq() const; 00170 //-- bool last() const; 00171 }; 00172 00174 00183 class HKL_reference_coord : public HKL_reference_base 00184 { 00185 public: 00187 HKL_reference_coord() {} 00189 HKL_reference_coord( const HKL_info& hklinfo_, const HKL& hkl ) { 00190 hklinfo = &hklinfo_; 00191 hkl_ = hkl; 00192 index_ = hklinfo->index_of( hklinfo->find_sym( hkl_, sym_, friedel_ ) ); 00193 if ( index_ < 0 ) Message::message( Message_fatal( "HKL_reference_coord: hkl not found" ) ); 00194 } 00196 inline const HKL& hkl() const { return hkl_; } 00198 inline const int& sym() const { return sym_; } 00200 inline const bool& friedel() const { return friedel_; } 00202 00205 inline HKL_reference_coord& set_hkl( const HKL& hkl__ ) { 00206 hkl_ = hkl__; 00207 HKL equiv = hkl__.transform(hklinfo->isymop[sym_]); 00208 if ( friedel_ ) equiv = -equiv; 00209 index_ = hklinfo->index_of( equiv ); 00210 if ( index_ < 0 ) index_ = 00211 hklinfo->index_of( hklinfo->find_sym( hkl_, sym_, friedel_ ) ); 00212 return *this; 00213 } 00215 inline HKL_reference_coord& next() { 00216 sym_ = 0; friedel_ = false; 00217 index_++; 00218 if ( !last() ) hkl_ = hklinfo->hkl_of( index_ ); 00219 return *this; 00220 } 00221 // increment h,k,l 00222 inline HKL_reference_coord& next_h() { hkl_.h()++; set_hkl( hkl_ ); return *this; } 00223 inline HKL_reference_coord& next_k() { hkl_.k()++; set_hkl( hkl_ ); return *this; } 00224 inline HKL_reference_coord& next_l() { hkl_.l()++; set_hkl( hkl_ ); return *this; } 00225 inline HKL_reference_coord& prev_h() { hkl_.h()--; set_hkl( hkl_ ); return *this; } 00226 inline HKL_reference_coord& prev_k() { hkl_.k()--; set_hkl( hkl_ ); return *this; } 00227 inline HKL_reference_coord& prev_l() { hkl_.l()--; set_hkl( hkl_ ); return *this; } 00228 00229 inline HKL_reference_coord& operator =( const HKL& hkl__ ) 00230 { return set_hkl( hkl__ ); } 00231 // inherited functions listed for documentation purposes 00232 //-- const HKL_info& base_hkl_info() const; 00233 //-- const int& index() const; 00234 //-- const ftype invresolsq() const; 00235 //-- bool last() const; 00236 protected: 00237 HKL hkl_; 00238 int sym_; 00239 bool friedel_; 00240 }; 00241 00243 HKL_reference_index first() const { return HKL_reference_index( *this, 0 ); } 00244 00245 void debug() const; 00246 00247 protected: 00248 Spacegroup spacegroup_; 00249 Cell cell_; 00250 HKL_sampling hkl_sampling_; 00251 Resolution resolution_; 00252 std::vector<Isymop> isymop; 00253 00255 std::vector<HKL> hkl; 00257 std::vector<HKL_class> hkl_class_lookup; 00259 std::vector<ftype32> invresolsq_lookup; 00260 00262 HKL_lookup lookup; 00264 Range<ftype> invresolsq_range_; 00265 00266 // internal methods: 00268 void update_hkl_list(); 00269 00270 friend class HKL_info::HKL_reference_base; 00271 friend class HKL_info::HKL_reference_index; 00272 friend class HKL_info::HKL_reference_coord; 00273 }; 00274 00275 00276 } // namespace clipper 00277 00278 #endif