Clipper
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00001 00004 //C Copyright (C) 2000-2006 Kevin Cowtan and University of York 00005 //L 00006 //L This library is free software and is distributed under the terms 00007 //L and conditions of version 2.1 of the GNU Lesser General Public 00008 //L Licence (LGPL) with the following additional clause: 00009 //L 00010 //L `You may also combine or link a "work that uses the Library" to 00011 //L produce a work containing portions of the Library, and distribute 00012 //L that work under terms of your choice, provided that you give 00013 //L prominent notice with each copy of the work that the specified 00014 //L version of the Library is used in it, and that you include or 00015 //L provide public access to the complete corresponding 00016 //L machine-readable source code for the Library including whatever 00017 //L changes were used in the work. (i.e. If you make changes to the 00018 //L Library you must distribute those, but you do not need to 00019 //L distribute source or object code to those portions of the work 00020 //L not covered by this licence.)' 00021 //L 00022 //L Note that this clause grants an additional right and does not impose 00023 //L any additional restriction, and so does not affect compatibility 00024 //L with the GNU General Public Licence (GPL). If you wish to negotiate 00025 //L other terms, please contact the maintainer. 00026 //L 00027 //L You can redistribute it and/or modify the library under the terms of 00028 //L the GNU Lesser General Public License as published by the Free Software 00029 //L Foundation; either version 2.1 of the License, or (at your option) any 00030 //L later version. 00031 //L 00032 //L This library is distributed in the hope that it will be useful, but 00033 //L WITHOUT ANY WARRANTY; without even the implied warranty of 00034 //L MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 00035 //L Lesser General Public License for more details. 00036 //L 00037 //L You should have received a copy of the CCP4 licence and/or GNU 00038 //L Lesser General Public License along with this library; if not, write 00039 //L to the CCP4 Secretary, Daresbury Laboratory, Warrington WA4 4AD, UK. 00040 //L The GNU Lesser General Public can also be obtained by writing to the 00041 //L Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, 00042 //L MA 02111-1307 USA 00043 00044 00045 #ifndef CLIPPER_RESOL_BASISFN 00046 #define CLIPPER_RESOL_BASISFN 00047 00048 #include "resol_fn.h" 00049 00050 namespace clipper { 00051 00052 00054 00061 class Resolution_ordinal : public Generic_ordinal 00062 { 00063 public: 00065 void init( const HKL_info& hklinfo, const ftype& power ); 00067 void init( const HKL_data_base& hkldata, const ftype& power ); 00069 void init( const HKL_data_base& hkldata, const Cell& cell, const ftype& power ); 00070 }; 00071 00072 00074 00076 class BasisFn_binner : public BasisFn_base 00077 { 00078 public: 00080 BasisFn_binner( const HKL_info& hklinfo, const int& nbins_, const ftype power = 1.0 ) : BasisFn_base( nbins_ ) { s_ord.init( hklinfo, power ); } 00082 BasisFn_binner( const HKL_data_base& hkldata, const int& nbins_, const ftype power = 1.0 ) : BasisFn_base( nbins_ ) { s_ord.init( hkldata, hkldata.base_cell(), power ); } 00084 ftype f_s( const ftype& s, const std::vector<ftype>& params ) const; 00086 const BasisFn_base::Fderiv& fderiv_s( const ftype& s, const std::vector<ftype>& params ) const; 00088 FNtype type() const { return LINEAR; } 00090 int num_diagonals() const { return 1; } 00092 ftype f( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return f_s( hkl.invresolsq( cell ), params ); } 00094 const BasisFn_base::Fderiv& fderiv( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return fderiv_s( hkl.invresolsq( cell ), params ); } 00095 private: 00096 Resolution_ordinal s_ord; //<! resolution ordinal 00097 }; 00098 00099 00101 00103 class BasisFn_linear : public BasisFn_base 00104 { 00105 public: 00107 BasisFn_linear( const HKL_info& hklinfo, const int& nbins_, const ftype power = 1.0 ) : BasisFn_base( nbins_ ) { s_ord.init( hklinfo, power ); } 00109 BasisFn_linear( const HKL_data_base& hkldata, const int& nbins_, const ftype power = 1.0 ) : BasisFn_base( nbins_ ) { s_ord.init( hkldata, hkldata.base_cell(), power ); } 00111 ftype f_s( const ftype& s, const std::vector<ftype>& params ) const; 00113 const BasisFn_base::Fderiv& fderiv_s( const ftype& s, const std::vector<ftype>& params ) const; 00115 FNtype type() const { return LINEAR; } 00117 int num_diagonals() const { return 2; } 00119 ftype f( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return f_s( hkl.invresolsq( cell ), params ); } 00121 const BasisFn_base::Fderiv& fderiv( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return fderiv_s( hkl.invresolsq( cell ), params ); } 00122 private: 00123 Resolution_ordinal s_ord; //<! resolution ordinal 00124 }; 00125 00126 00128 00130 class BasisFn_spline : public BasisFn_base 00131 { 00132 public: 00134 BasisFn_spline( const HKL_info& hklinfo, const int& nbins_, const ftype power = 1.0 ) : BasisFn_base( nbins_ ) { s_ord.init( hklinfo, power ); } 00136 BasisFn_spline( const HKL_data_base& hkldata, const int& nbins_, const ftype power = 1.0 ) : BasisFn_base( nbins_ ) { s_ord.init( hkldata, hkldata.base_cell(), power ); } 00138 ftype f_s( const ftype& s, const std::vector<ftype>& params ) const; 00140 const BasisFn_base::Fderiv& fderiv_s( const ftype& s, const std::vector<ftype>& params ) const; 00142 FNtype type() const { return LINEAR; } 00144 int num_diagonals() const { return 3; } 00146 ftype f( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return f_s( hkl.invresolsq( cell ), params ); } 00148 const BasisFn_base::Fderiv& fderiv( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return fderiv_s( hkl.invresolsq( cell ), params ); } 00149 private: 00150 Resolution_ordinal s_ord; //<! resolution ordinal 00151 }; 00152 00153 00155 00156 class BasisFn_gaussian : public BasisFn_base 00157 { 00158 public: 00160 BasisFn_gaussian() : BasisFn_base( 2 ) {} 00162 //ftype f_s( const ftype& s, const std::vector<ftype>& params ) const; 00164 const BasisFn_base::Fderiv& fderiv_s( const ftype& s, const std::vector<ftype>& params ) const; 00166 //ftype f( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return f_s( hkl.invresolsq( cell ), params ); } 00168 const BasisFn_base::Fderiv& fderiv( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return fderiv_s( hkl.invresolsq( cell ), params ); } 00170 ftype scale( const std::vector<ftype>& params ) const; 00172 ftype u_iso( const std::vector<ftype>& params ) const; 00173 }; 00174 00175 00177 00178 class BasisFn_aniso_gaussian : public BasisFn_base 00179 { 00180 public: 00182 BasisFn_aniso_gaussian() : BasisFn_base( 7 ) {} 00184 const BasisFn_base::Fderiv& fderiv_coord( const Coord_reci_orth& xs, const std::vector<ftype>& params ) const; 00186 //ftype f( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return f_coord( hkl.coord_reci_orth( cell ), params ); } 00188 const BasisFn_base::Fderiv& fderiv( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return fderiv_coord( hkl.coord_reci_orth( cell ), params ); } 00190 ftype scale( const std::vector<ftype>& params ) const; 00192 U_aniso_orth u_aniso_orth( const std::vector<ftype>& params ) const; 00193 }; 00194 00195 00197 00201 class BasisFn_log_gaussian : public BasisFn_base 00202 { 00203 public: 00205 BasisFn_log_gaussian() : BasisFn_base( 2 ) {} 00207 //ftype f_s( const ftype& s, const std::vector<ftype>& params ) const; 00209 const BasisFn_base::Fderiv& fderiv_s( const ftype& s, const std::vector<ftype>& params ) const; 00211 //ftype f( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return f_s( hkl.invresolsq( cell ), params ); } 00213 const BasisFn_base::Fderiv& fderiv( const HKL& hkl, const Cell& cell, const 00214 std::vector<ftype>& params ) const { return fderiv_s( hkl.invresolsq( cell ), params ); } 00216 FNtype type() const { return LINEAR; } 00218 ftype scale( const std::vector<ftype>& params ) const; 00220 ftype u_iso( const std::vector<ftype>& params ) const; 00221 }; 00222 00223 00225 00229 class BasisFn_log_aniso_gaussian : public BasisFn_base 00230 { 00231 public: 00233 BasisFn_log_aniso_gaussian() : BasisFn_base( 7 ) {} 00235 const BasisFn_base::Fderiv& fderiv_coord( const Coord_reci_orth& xs, const std::vector<ftype>& params ) const; 00237 //ftype f( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return f_coord( hkl.coord_reci_orth( cell ), params ); } 00239 const BasisFn_base::Fderiv& fderiv( const HKL& hkl, const Cell& cell, const 00240 std::vector<ftype>& params ) const { return fderiv_coord( hkl.coord_reci_orth( cell ), params ); } 00242 FNtype type() const { return LINEAR; } 00244 ftype scale( const std::vector<ftype>& params ) const; 00246 U_aniso_orth u_aniso_orth( const std::vector<ftype>& params ) const; 00247 }; 00248 00249 00251 00252 class BasisFn_expcubic : public BasisFn_base 00253 { 00254 public: 00256 BasisFn_expcubic() : BasisFn_base( 4 ) {} 00258 const BasisFn_base::Fderiv& fderiv_s( const ftype& s, const std::vector<ftype>& params ) const; 00260 //ftype f( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return f_s( hkl.invresolsq( cell ), params ); } 00262 const BasisFn_base::Fderiv& fderiv( const HKL& hkl, const Cell& cell, const std::vector<ftype>& params ) const { return fderiv_s( hkl.invresolsq( cell ), params ); } 00263 }; 00264 00265 00266 } // namespace clipper 00267 00268 #endif