Clipper
spacegroup.h
00001 
00004 //C Copyright (C) 2000-2006 Kevin Cowtan and University of York
00005 //L
00006 //L  This library is free software and is distributed under the terms
00007 //L  and conditions of version 2.1 of the GNU Lesser General Public
00008 //L  Licence (LGPL) with the following additional clause:
00009 //L
00010 //L     `You may also combine or link a "work that uses the Library" to
00011 //L     produce a work containing portions of the Library, and distribute
00012 //L     that work under terms of your choice, provided that you give
00013 //L     prominent notice with each copy of the work that the specified
00014 //L     version of the Library is used in it, and that you include or
00015 //L     provide public access to the complete corresponding
00016 //L     machine-readable source code for the Library including whatever
00017 //L     changes were used in the work. (i.e. If you make changes to the
00018 //L     Library you must distribute those, but you do not need to
00019 //L     distribute source or object code to those portions of the work
00020 //L     not covered by this licence.)'
00021 //L
00022 //L  Note that this clause grants an additional right and does not impose
00023 //L  any additional restriction, and so does not affect compatibility
00024 //L  with the GNU General Public Licence (GPL). If you wish to negotiate
00025 //L  other terms, please contact the maintainer.
00026 //L
00027 //L  You can redistribute it and/or modify the library under the terms of
00028 //L  the GNU Lesser General Public License as published by the Free Software
00029 //L  Foundation; either version 2.1 of the License, or (at your option) any
00030 //L  later version.
00031 //L
00032 //L  This library is distributed in the hope that it will be useful, but
00033 //L  WITHOUT ANY WARRANTY; without even the implied warranty of
00034 //L  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
00035 //L  Lesser General Public License for more details.
00036 //L
00037 //L  You should have received a copy of the CCP4 licence and/or GNU
00038 //L  Lesser General Public License along with this library; if not, write
00039 //L  to the CCP4 Secretary, Daresbury Laboratory, Warrington WA4 4AD, UK.
00040 //L  The GNU Lesser General Public can also be obtained by writing to the
00041 //L  Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
00042 //L  MA 02111-1307 USA
00043 /* some code & data converted from CCP4 library symlib.f (various authors) */
00044 
00045 
00046 #ifndef CLIPPER_SPACEGROUP
00047 #define CLIPPER_SPACEGROUP
00048 
00049 
00050 #include "symop.h"
00051 #include "spacegroup_data.h"
00052 
00053 
00054 namespace clipper {
00055 
00056   // forward definitions
00057   class HKL;
00058   class HKL_class;
00059   class Coord_frac;
00060 
00061 
00063 
00073   class Spgr_descr
00074   {
00075   public:
00076     enum TYPE { Hall, HM, XHM, Symops, Number, Unknown };
00078     Spgr_descr();
00080     explicit Spgr_descr( const String& symb, TYPE type = Unknown );
00082     explicit Spgr_descr( const int& num );
00084     int spacegroup_number() const;
00086     String symbol_hall() const;
00088     String symbol_hm() const;
00090     String symbol_xhm() const;
00092     String symbol_hm_ext() const;
00094     static void set_preferred( const char& c );
00095 
00097     class Symop_codes : public std::vector<Symop_code>
00098     {
00099     public:
00101       void init_hall( const String& symb );
00103       void init_symops( const String& symb );
00105       Symop_codes expand() const;
00107       Symop_codes primitive_noninversion_ops() const;
00109       Symop_codes inversion_ops() const;
00111       Symop_codes primitive_ops() const;
00113       Symop_codes centering_ops() const;
00115       Symop_codes laue_ops() const;
00117       Symop_codes pgrp_ops() const;
00119       Symop_codes patterson_ops() const;
00121       Symop_codes generator_ops() const;
00123       Symop_codes product( const Symop_codes& ops2 ) const;
00125       unsigned int hash() const;
00126     };
00127 
00129     explicit Spgr_descr( const Symop_codes& ops );
00131     const Symop_codes& generator_ops() const { return generators_; }
00133     const unsigned int& hash() const { return hash_; }
00134 
00135   protected:
00136     unsigned int hash_;       
00137     Symop_codes generators_;  
00138 
00139     static char pref_12, pref_hr;  
00140   };
00141 
00142 
00143   // ObjectCache data type
00144   class Spgr_cacheobj
00145   {
00146   public:
00147     typedef Spgr_descr Key;
00148     Spgr_cacheobj( const Key& spgr_cachekey );  
00149     bool matches( const Key& spgr_cachekey ) const; 
00150     String format() const;  
00151     // data
00152     Key spgr_cachekey_;                 
00153     int nsym, nsymn, nsymi, nsymc, nsymp;  
00154     int lgrp;                           
00155     std::vector<Symop>  symops;         
00156     std::vector<Isymop> isymops;        
00157     Vec3<> asu_min_, asu_max_;          
00158     static Mutex mutex;                 
00159   };
00160 
00161 
00163 
00172   class Spacegroup : public Spgr_descr
00173   {
00174    public:
00176     enum TYPE { Null, P1 };
00178     enum AXIS { A=0, B=1, C=2 };
00180     Spacegroup() {};
00182     explicit Spacegroup( TYPE type );
00184     explicit Spacegroup( const Spgr_descr& spgr_descr );
00186     void init( const Spgr_descr& spgr_descr );
00187 
00189     bool is_null() const;
00190 
00191     // methods
00193     inline const Spgr_descr& descr() const { return (*this); }
00195     inline const int& num_symops() const { return nsym; }
00197     inline const int& num_primops() const { return num_primitive_symops(); }
00199     inline const int& num_primitive_symops() const { return nsymp; }
00201     inline const int& num_centering_symops() const { return nsymc; }
00203     inline const int& num_inversion_symops() const { return nsymi; }
00205     inline const int& num_primitive_noninversion_symops() const { return nsymn;}
00207     inline const Symop& symop( const int& sym_no ) const
00208       { return symops[sym_no]; }
00210     inline const Symop& primitive_symop( const int& sym_no ) const
00211       { return symops[sym_no]; }
00213     inline const Symop& inversion_symop( const int& sym_no ) const
00214       { return symops[nsymn*sym_no]; }
00216     inline const Symop& centering_symop( const int& sym_no ) const
00217       { return symops[nsymp*sym_no]; }
00219     int order_of_symmetry_about_axis( const AXIS axis ) const;
00220 
00222     HKL_class hkl_class( const HKL& hkl ) const;
00224     bool recip_asu( const HKL& hkl ) const;
00225 
00227     int product_op( const int& s1, int& s2 ) const;
00229     int inverse_op( const int& s ) const;
00230 
00232     Coord_frac asu_max() const;
00234     Coord_frac asu_min() const;
00235 
00237     bool invariant_under_change_of_hand() const;
00238 
00239     // inherited functions listed for documentation purposes
00240     //-- int spacegroup_number() const;
00241     //-- String symbol_hall() const;
00242     //-- String symbol_hm() const;
00244     String symbol_laue() const;
00245 
00247     static Spacegroup p1() { return Spacegroup( P1 ); }
00249     static Spacegroup null() { return Spacegroup( Null ); }
00250 
00251     void debug() const;
00252 
00253   private:
00254     ObjectCache<Spgr_cacheobj>::Reference cacheref;  
00255     const Symop* symops;    
00256     const Isymop* isymops;  
00257     data::ASUfn asufn;      
00258     int nsym, nsymn, nsymi, nsymc, nsymp; 
00259   };
00260 
00261 
00262 } // namespace clipper
00263 
00264 #endif